RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 DDX42Q86XP3 938 aaKnown RBP eCLIP6.69□□□□□ -1.34
CLN3-223ENST00000566472 PHF13Q86YI8 300 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 BRSK2Q8IWQ3 736 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 GPC2Q8N158 579 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 PROCA1Q8NCQ7 364 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 TRPM4Q8TD43 1214 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 GRK7Q8WTQ7 553 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 UBLCP1Q8WVY7 318 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 TCP11Q8WWU5 503 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 KRT35Q92764 455 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 MAGOHBQ96A72 148 aaKnown RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 FAXDC2Q96IV6 333 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 CEP89Q96ST8 783 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 HINFPQ9BQA5 517 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 SGIP1Q9BQI5 828 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 JPH2Q9BR39 696 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 SH2D3AQ9BRG2 576 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 TRIM51Q9BSJ1 452 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 CELF4Q9BZC1 486 aaKnown RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 STMN4Q9H169 189 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 C2orf40Q9H1Z8 148 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 DPH5Q9H2P9 285 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 CNOT10Q9H9A5 744 aaKnown RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 MRPL47Q9HD33 250 aaKnown RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 ERVK-5Q9HDB9 667 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 TOPORSQ9NS56 1045 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 HOMER3Q9NSC5 361 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 RBAKQ9NYW8 714 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 GRHL1Q9NZI5 618 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 FEZ2Q9UHY8 353 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.69□□□□□ -1.34
CLN3-223ENST00000566472 SNCAIPQ9Y6H5 919 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 ADGRA2Q96PE1 1338 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 SMCHD1A6NHR9 2005 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 WDR90Q96KV7 1748 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 MYH11P35749 1972 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 PAPPA2Q9BXP8 1791 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 LRRIQ4A6NIV6 560 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 K7ERI5 159 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 MYO1CO00159 1063 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 MYO1FO00160 1098 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 EBAG9O00559 213 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 NDC80O14777 642 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 MAFO75444 373 aaPredicted RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 LGR5O75473 907 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 USP2O75604 605 aaPredicted RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 FARP2O94887 1054 aaPredicted RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 PROSCO94903 275 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 VNN1O95497 513 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 ECEL1O95672 775 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 LSM8O95777 96 aaKnown RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 PYGMP11217 842 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 TNNI1P19237 187 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 ATP4AP20648 1035 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 UBA1P22314 1058 aaKnown RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 MAPK4P31152 587 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 LSP1P33241 339 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 MARCKSL1P49006 195 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 ZNF132P52740 706 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 PMS2P54278 862 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 CORO7P57737 925 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 NLRP11P59045 1033 aaKnown RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 PPP2R2AP63151 447 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 NOMO3P69849 1222 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 C1QBPQ07021 282 aaKnown RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 ADCY2Q08462 1091 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 PDCLQ13371 301 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 PTGISQ16647 500 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 IER5Q5VY09 327 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 TDRD10Q5VZ19 366 aaKnown RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 NAA35Q5VZE5 725 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 DENND2CQ68D51 928 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 CDCA2Q69YH5 1023 aaPredicted RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 CCDC137Q6PK04 289 aaKnown RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 CRELD2Q6UXH1 353 aaPredicted RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 CEP128Q6ZU80 1094 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 MON1BQ7L1V2 547 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 ARMC9Q7Z3E5 817 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 WDR49Q8IV35 697 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 ABRAQ8N0Z2 381 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 ANKRD35Q8N283 1001 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 SH2D3CQ8N5H7 860 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 UBR7Q8N806 425 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 BBOF1Q8ND07 529 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 BCAS4Q8TDM0 211 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 BBXQ8WY36 941 aaPredicted RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 SEPT1Q8WYJ6 367 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 ZNF516Q92618 1163 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 ART4Q93070 314 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 TATDN2Q93075 761 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 CENPTQ96BT3 561 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 TLCD1Q96CP7 247 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 PGM2Q96G03 612 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 POP1Q99575 1024 aaKnown RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 MSTO1Q9BUK6 570 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 MRPL4Q9BYD3 311 aaKnown RBP6.68□□□□□ -1.34
CLN3-223ENST00000566472 FOXP3Q9BZS1 431 aa6.68□□□□□ -1.34
CLN3-223ENST00000566472 IMPG2Q9BZV3 1241 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms