RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SLC29A2Q14542 456 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 PGM5Q15124 567 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 SNCBQ16143 134 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 SPRED3Q2MJR0 410 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 PRELID2Q8N945 189 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 HVCN1Q96D96 273 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 C18orf8Q96DM3 657 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 ZSWIM1Q9BR11 485 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 STMN4Q9H169 189 aaPredicted RBP14.18□□□□□ -0.14
VPS4A-204ENST00000566354 CD248Q9HCU0 757 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 TLDC2A0PJX2 215 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 CCT8L1PA6NM43 557 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 CHMP2AO43633 222 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 DNAJC8O75937 253 aaPredicted RBP14.18□□□□□ -0.14
VPS4A-204ENST00000566354 SLMAPQ14BN4 828 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 ARHGEF16Q5VV41 709 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 RGMBQ6NW40 437 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 SYCP3Q8IZU3 236 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 ANKRD35Q8N283 1001 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 SMC1BQ8NDV3 1235 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 MAGEC3Q8TD91 643 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 ATXN2LQ8WWM7 1075 aaKnown RBP14.18□□□□□ -0.14
VPS4A-204ENST00000566354 RUNDC3BQ96NL0 473 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 PDCD2LQ9BRP1 358 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 ADAM7Q9H2U9 754 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 P4HA2O15460 535 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 LRRN2O75325 713 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 ARP10275 920 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 MYCLP12524 364 aaPredicted RBP14.17□□□□□ -0.14
VPS4A-204ENST00000566354 RPL21P46778 160 aaKnown RBP14.17□□□□□ -0.14
VPS4A-204ENST00000566354 CNTN2Q02246 1040 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 ITIH4Q14624 930 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 SELENOSQ9BQE4 189 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 STRA6Q9BX79 667 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 WNT8AQ9H1J5 351 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 SEMA4AQ9H3S1 761 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 CCDC134Q9H6E4 229 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 UBE2TQ9NPD8 197 aaPredicted RBP14.17□□□□□ -0.14
VPS4A-204ENST00000566354 TRPC6Q9Y210 931 aa14.17□□□□□ -0.14
VPS4A-204ENST00000566354 GAS7O60861 476 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 RTN2O75298 545 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 PEX5P50542 639 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 IRX1P78414 480 aaPredicted RBP14.16□□□□□ -0.14
VPS4A-204ENST00000566354 SEL1L2Q5TEA6 688 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 PCNX4Q63HM2 1172 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 CCDC137Q6PK04 289 aaKnown RBP14.16□□□□□ -0.14
VPS4A-204ENST00000566354 INTS8Q75QN2 995 aaKnown RBP14.16□□□□□ -0.14
VPS4A-204ENST00000566354 PIGWQ7Z7B1 504 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 SLC20A1Q8WUM9 679 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 KRT35Q92764 455 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 MXRA8Q9BRK3 442 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 WDR11Q9BZH6 1224 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 AZI2Q9H6S1 392 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 INTS9Q9NV88 658 aaKnown RBP14.16□□□□□ -0.14
VPS4A-204ENST00000566354 HAUS2Q9NVX0 235 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 SLC45A1Q9Y2W3 748 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 PCDHA3Q9Y5H8 950 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 MTA2O94776 668 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 RARGP13631 454 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 PREPLQ4J6C6 727 aaPredicted RBP14.16□□□□□ -0.14
VPS4A-204ENST00000566354 ZC3H12AQ5D1E8 599 aaKnown RBP14.16□□□□□ -0.14
VPS4A-204ENST00000566354 AADACL2Q6P093 401 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 RDH13Q8NBN7 331 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 PORCNQ9H237 461 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 FBXO40Q9UH90 709 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 MTUS1Q9ULD2 1270 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 ABT1Q9ULW3 272 aaKnown RBP14.16□□□□□ -0.14
VPS4A-204ENST00000566354 TLL2Q9Y6L7 1015 aa14.16□□□□□ -0.14
VPS4A-204ENST00000566354 IGF2BP3O00425 579 aaKnown RBP eCLIP14.15□□□□□ -0.14
VPS4A-204ENST00000566354 GZMAP12544 262 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 COMTP21964 271 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 IFI35P80217 286 aaPredicted RBP14.15□□□□□ -0.14
VPS4A-204ENST00000566354 CYP1B1Q16678 543 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 WLSQ5T9L3 541 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 WDR78Q5VTH9 848 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 TSHZ1Q6ZSZ6 1077 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 TMEM174Q8WUU8 243 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 PKD2L1Q9P0L9 805 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 SAMD15Q9P1V8 674 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 EMSYQ7Z589 1322 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 SLC25A27O95847 323 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 NR3C2P08235 984 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 GSTA1P08263 222 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 TNFAIP8L3Q5GJ75 292 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 TTC27Q6P3X3 843 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 CYFIP1Q7L576 1253 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 TAOK1Q7L7X3 1001 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 RPUSD2Q8IZ73 545 aaKnown RBP14.15□□□□□ -0.14
VPS4A-204ENST00000566354 NSUN6Q8TEA1 469 aaKnown RBP14.15□□□□□ -0.14
VPS4A-204ENST00000566354 ART4Q93070 314 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 KCNH7Q9NS40 1196 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 UBIAD1Q9Y5Z9 338 aa14.15□□□□□ -0.14
VPS4A-204ENST00000566354 ZNFX1Q9P2E3 1918 aaKnown RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 TESPA1A2RU30 521 aaPredicted RBP14.14□□□□□ -0.15
VPS4A-204ENST00000566354 ARHGEF35A5YM69 484 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 RASGRF2O14827 1237 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 RIPK2O43353 540 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 MGRN1O60291 552 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 ATP2C2O75185 946 aa14.14□□□□□ -0.15
VPS4A-204ENST00000566354 COQ9O75208 318 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms