RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 SNX27Q96L92 541 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 PIDD1Q9HB75 910 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 MTMR6Q9Y217 621 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 PLXNA3P51805 1871 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 TECTAO75443 2155 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 CITO14578 2027 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 K7ENM7 598 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 TRAK2O60296 914 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 MYBP10242 640 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 KCNE1P15382 129 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 LIG4P49917 911 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 KYAT1Q16773 422 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 SPECC1Q5M775 1068 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 FAM173BQ6P4H8 233 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 LILRA6Q6PI73 481 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 HFE2Q6ZVN8 426 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 BMP8AQ7Z5Y6 402 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 KRI1Q8N9T8 703 aaKnown RBP18.41■□□□□ 0.54
CLK3-210ENST00000563112 LNX1Q8TBB1 728 aaPredicted RBP18.41■□□□□ 0.54
CLK3-210ENST00000563112 SMG7Q92540 1137 aaKnown RBP18.41■□□□□ 0.54
CLK3-210ENST00000563112 STAMQ92783 540 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 SNX21Q969T3 373 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 EPSTI1Q96J88 318 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 RHOBTB2Q9BYZ6 727 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 GOLGA2P5Q9HBQ8 144 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 ZDHHC7Q9NXF8 308 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 FBXO2Q9UK22 296 aaPredicted RBP18.41■□□□□ 0.54
CLK3-210ENST00000563112 SORCS3Q9UPU3 1222 aa18.41■□□□□ 0.54
CLK3-210ENST00000563112 MTCL1Q9Y4B5 1905 aaKnown RBP18.41■□□□□ 0.54
CLK3-210ENST00000563112 MYO10Q9HD67 2058 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 FGFR3P22607 806 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 RPL9P32969 192 aaKnown RBP18.4■□□□□ 0.54
CLK3-210ENST00000563112 ZNF131P52739 623 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 MCL1Q07820 350 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 MTMR3Q13615 1198 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 LIN9Q5TKA1 542 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 RRAGBQ5VZM2 374 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 LRRC15Q8TF66 581 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 KCNN1Q92952 543 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 PBXIP1Q96AQ6 731 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 FAM122AQ96E09 287 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 CLSTN3Q9BQT9 956 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 CNTN3Q9P232 1028 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 STK17AQ9UEE5 414 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 LIMD1Q9UGP4 676 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 TBX20Q9UMR3 447 aa18.4■□□□□ 0.54
CLK3-210ENST00000563112 PODXLO00592 558 aa18.39■□□□□ 0.53
CLK3-210ENST00000563112 HNRNPDLO14979 420 aaKnown RBP18.39■□□□□ 0.53
CLK3-210ENST00000563112 RFPL2O75678 378 aa18.39■□□□□ 0.53
CLK3-210ENST00000563112 HSP90AA1P07900 732 aaKnown RBP18.39■□□□□ 0.53
CLK3-210ENST00000563112 CLTAP09496 248 aa18.39■□□□□ 0.53
CLK3-210ENST00000563112 ANKS3Q6ZW76 656 aa18.39■□□□□ 0.53
CLK3-210ENST00000563112 HSCBQ8IWL3 235 aa18.39■□□□□ 0.53
CLK3-210ENST00000563112 UBALD2Q8IYN6 164 aa18.39■□□□□ 0.53
CLK3-210ENST00000563112 ZMAT2Q96NC0 199 aaKnown RBP18.39■□□□□ 0.53
CLK3-210ENST00000563112 PRKD2Q9BZL6 878 aa18.39■□□□□ 0.53
CLK3-210ENST00000563112 PLEKHA5Q9HAU0 1116 aa18.39■□□□□ 0.53
CLK3-210ENST00000563112 WDR6Q9NNW5 1121 aaKnown RBP18.39■□□□□ 0.53
CLK3-210ENST00000563112 NUB1Q9Y5A7 615 aa18.39■□□□□ 0.53
CLK3-210ENST00000563112 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.39■□□□□ 0.53
CLK3-210ENST00000563112 ZMYND10O75800 440 aa18.38■□□□□ 0.53
CLK3-210ENST00000563112 SOX4Q06945 474 aaPredicted RBP18.38■□□□□ 0.53
CLK3-210ENST00000563112 SLC39A14Q15043 492 aa18.38■□□□□ 0.53
CLK3-210ENST00000563112 SLC10A6Q3KNW5 377 aa18.38■□□□□ 0.53
CLK3-210ENST00000563112 SEZ6Q53EL9 994 aa18.38■□□□□ 0.53
CLK3-210ENST00000563112 USP49Q70CQ1 688 aa18.38■□□□□ 0.53
CLK3-210ENST00000563112 SV2BQ7L1I2 683 aa18.38■□□□□ 0.53
CLK3-210ENST00000563112 SUGP1Q8IWZ8 645 aaKnown RBP18.38■□□□□ 0.53
CLK3-210ENST00000563112 FEZF2Q8TBJ5 459 aa18.38■□□□□ 0.53
CLK3-210ENST00000563112 ZNF396Q96N95 335 aaPredicted RBP18.38■□□□□ 0.53
CLK3-210ENST00000563112 CLIC6Q96NY7 704 aa18.38■□□□□ 0.53
CLK3-210ENST00000563112 USP28Q96RU2 1077 aa18.38■□□□□ 0.53
CLK3-210ENST00000563112 FBXW11Q9UKB1 542 aa18.38■□□□□ 0.53
CLK3-210ENST00000563112 MORC2Q9Y6X9 1032 aaPredicted RBP18.38■□□□□ 0.53
CLK3-210ENST00000563112 C2orf16Q68DN1 1984 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 PIGRP01833 764 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 PDIA4P13667 645 aaKnown RBP18.37■□□□□ 0.53
CLK3-210ENST00000563112 TKTP29401 623 aaKnown RBP18.37■□□□□ 0.53
CLK3-210ENST00000563112 GBP2P32456 591 aaPredicted RBP18.37■□□□□ 0.53
CLK3-210ENST00000563112 OR1D2P34982 312 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 PLA2G5P39877 138 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 BRCC3P46736 316 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 RAB33AQ14088 237 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 STK38Q15208 465 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 CD300LGQ6UXG3 332 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 CCDC73Q6ZRK6 1079 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 DYMQ7RTS9 669 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 ZNF707Q96C28 371 aaPredicted RBP18.37■□□□□ 0.53
CLK3-210ENST00000563112 MTRRQ9UBK8 725 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 BACE2Q9Y5Z0 518 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 CLUHO75153 1309 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 DENND4AQ7Z401 1863 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 MUC6Q6W4X9 2439 aa18.37■□□□□ 0.53
CLK3-210ENST00000563112 VWA8A3KMH1 1905 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 I3L4J1 428 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 OGTO15294 1046 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 XPOTO43592 962 aaKnown RBP18.36■□□□□ 0.53
CLK3-210ENST00000563112 PAPLNO95428 1278 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 ASGR2P07307 311 aa18.36■□□□□ 0.53
CLK3-210ENST00000563112 HNRNPA1P09651 372 aaKnown RBP eCLIP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms