RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 HEMGNQ9BXL5 484 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 RSAD1Q9HA92 442 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 DBR1Q9UK59 544 aaKnown RBP9.86□□□□□ -0.83
VPS39-205ENST00000562258 PYCARDQ9ULZ3 195 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 C5P01031 1676 aa9.86□□□□□ -0.83
VPS39-205ENST00000562258 PPP1R3GB7ZBB8 358 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 ZNF862O60290 1169 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 URODP06132 367 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 UCHL3P15374 230 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 KCNA2P16389 499 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 PCSK1P29120 753 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 KYAT1Q16773 422 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 CTXN3Q4LDR2 81 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 EEF1DP3Q658K8 133 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 OLFML2BQ68BL8 750 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 CC2D1AQ6P1N0 951 aaPredicted RBP9.85□□□□□ -0.83
VPS39-205ENST00000562258 MTHFD1LQ6UB35 978 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 SV2AQ7L0J3 742 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 TRAPPC11Q7Z392 1133 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 SRGAP1Q7Z6B7 1085 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 KCTD6Q8NC69 237 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 TRIM58Q8NG06 486 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 PPTC7Q8NI37 304 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 CCDC26Q8TAB7 109 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 ZMYND15Q9H091 742 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 SEMA6BQ9H3T3 888 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 HPSEQ9Y251 543 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 PTPN22Q9Y2R2 807 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 PCDHB12Q9Y5F1 795 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 ZNF536O15090 1300 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 ANKRD63C9JTQ0 380 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 KRIT1O00522 736 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 SLU7O95391 586 aaKnown RBP9.85□□□□□ -0.83
VPS39-205ENST00000562258 SPATA31C1P0DKV0 1188 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 CCL5P13501 91 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 HSPA6P17066 643 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 SDC4P31431 198 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 ACLYP53396 1101 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 CDH8P55286 799 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 MTFR1Q15390 333 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 ECM1Q16610 540 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 DCAF4L1Q3SXM0 396 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 PTPN18Q99952 460 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 SAR1BQ9Y6B6 198 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 ARFGEF2Q9Y6D5 1785 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 GOLGA6CA6NDK9 693 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 GOLGA6BA6NDN3 693 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 KIAA0391O15091 583 aaKnown RBP9.85□□□□□ -0.83
VPS39-205ENST00000562258 EIF3DO15371 548 aaKnown RBP eCLIP9.85□□□□□ -0.83
VPS39-205ENST00000562258 GOLGA6DP0CG33 693 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 IRF1P10914 325 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 SKIP12755 728 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 RAP1GAPP47736 663 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 ALDH1A3P47895 512 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 VAV2P52735 878 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 CAPSQ13938 189 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 ABHD15Q6UXT9 468 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 TOGARAM2Q6ZUX3 1019 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 KIAA0895Q8NCT3 520 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 GOLGA6AQ9NYA3 693 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 CEP72Q9P209 647 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 APEX2Q9UBZ4 518 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 HEY1Q9Y5J3 304 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 MFAP3LO75121 409 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 IL18RAPO95256 599 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 KRT1P04264 644 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 PMS1P54277 932 aaKnown RBP9.85□□□□□ -0.83
VPS39-205ENST00000562258 MRPS6P82932 125 aaKnown RBP9.85□□□□□ -0.83
VPS39-205ENST00000562258 DRP2Q13474 957 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 SV2CQ496J9 727 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 ACCSLQ4AC99 568 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 C1orf186Q6ZWK4 172 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 PALB2Q86YC2 1186 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 MIB1Q86YT6 1006 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 DHX40Q8IX18 779 aaKnown RBP9.85□□□□□ -0.83
VPS39-205ENST00000562258 TNS4Q8IZW8 715 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 SLC35F6Q8N357 371 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 CEP112Q8N8E3 955 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 DBF4BQ8NFT6 615 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 PDCD6IPQ8WUM4 868 aaKnown RBP9.85□□□□□ -0.83
VPS39-205ENST00000562258 NAGPAQ9UK23 515 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 STRIP2Q9ULQ0 834 aa9.85□□□□□ -0.83
VPS39-205ENST00000562258 MYH2Q9UKX2 1941 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 BRD2P25440 801 aaKnown RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 AP3M2P53677 418 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 SP2Q02086 613 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 CFAP221Q4G0U5 840 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 RBM23Q86U06 439 aaKnown RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 CCDC63Q8NA47 563 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 HELQQ8TDG4 1101 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 RNF25Q96BH1 459 aaPredicted RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 CHP1Q99653 195 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 DPH5Q9H2P9 285 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 SNED1Q8TER0 1413 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 PASKQ96RG2 1323 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 KDM3BQ7LBC6 1761 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 BAZ2AQ9UIF9 1905 aaKnown RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 GOLGA8CPA6NN73 597 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 F5H423 210 aaPredicted RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 POLR3GO15318 223 aaPredicted RBP9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms