RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 DOCK6Q96HP0 2047 aa17.12■□□□□ 0.33
VPS39-203ENST00000561797 MYMKA6NI61 221 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 HNRNPDLO14979 420 aaKnown RBP17.11■□□□□ 0.33
VPS39-203ENST00000561797 MEFVO15553 781 aaPredicted RBP17.11■□□□□ 0.33
VPS39-203ENST00000561797 B3GAT3O94766 335 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 GLUD1P00367 558 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 MCL1Q07820 350 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 PKP1Q13835 747 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 ZC2HC1CQ53FD0 456 aaPredicted RBP17.11■□□□□ 0.33
VPS39-203ENST00000561797 XKR4Q5GH76 650 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 ATAT1Q5SQI0 421 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 DCLRE1AQ6PJP8 1040 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 SFR1Q86XK3 245 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 UROC1Q96N76 676 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 FIZ1Q96SL8 496 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 SFXN1Q9H9B4 322 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.11■□□□□ 0.33
VPS39-203ENST00000561797 FNIP2Q9P278 1114 aa17.11■□□□□ 0.33
VPS39-203ENST00000561797 I3L4J1 428 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 PPP6R2O75170 966 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 YEATS4O95619 227 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 CXCL8P10145 99 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 PDIA4P13667 645 aaKnown RBP17.1■□□□□ 0.33
VPS39-203ENST00000561797 KCNE1P15382 129 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 TNFSF9P41273 254 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 ELAVL2Q12926 359 aaKnown RBP17.1■□□□□ 0.33
VPS39-203ENST00000561797 PSMD5Q16401 504 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 UPP1Q16831 310 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 SLC10A6Q3KNW5 377 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 TMEM31Q5JXX7 168 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 CD300LGQ6UXG3 332 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 C3orf58Q8NDZ4 430 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 C18orf25Q96B23 403 aaPredicted RBP17.1■□□□□ 0.33
VPS39-203ENST00000561797 NECTIN4Q96NY8 510 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 SLC38A7Q9NVC3 462 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 TBC1D7Q9P0N9 293 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 CNTN3Q9P232 1028 aa17.1■□□□□ 0.33
VPS39-203ENST00000561797 IDEP14735 1019 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 SCP2P22307 547 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 BRCC3P46736 316 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 GTF2BQ00403 316 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 CREMQ03060 361 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 SPAG1Q07617 926 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 GPR65Q8IYL9 337 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 LNX1Q8TBB1 728 aaPredicted RBP17.09■□□□□ 0.33
VPS39-203ENST00000561797 STAMQ92783 540 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 KCNN1Q92952 543 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 DNAJC19Q96DA6 116 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 DDX27Q96GQ7 796 aaKnown RBP17.09■□□□□ 0.33
VPS39-203ENST00000561797 LRFN3Q9BTN0 628 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 C11orf16Q9NQ32 467 aa17.09■□□□□ 0.33
VPS39-203ENST00000561797 CCDC195A0A1B0GUA6 201 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 ANKRD63C9JTQ0 380 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 TMEM189-UBE2V1I3L0A0 370 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 PODXLO00592 558 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 OGTO15294 1046 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 TGM5O43548 720 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 GPR37L1O60883 481 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 CUTAO60888 179 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 PIGRP01833 764 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 CLTAP09496 248 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 FGFR3P22607 806 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 ZBTB41Q5SVQ8 909 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 SLC39A4Q6P5W5 647 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 ELMSAN1Q6PJG2 1045 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.08■□□□□ 0.32
VPS39-203ENST00000561797 ZNF720Q7Z2F6 126 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 GPR149Q86SP6 731 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 PIK3R5Q8WYR1 880 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 FAM212AQ96EL1 285 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 CLSTN3Q9BQT9 956 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 MSTO1Q9BUK6 570 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 IKZF4Q9H2S9 585 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 MRPL44Q9H9J2 332 aaKnown RBP17.08■□□□□ 0.32
VPS39-203ENST00000561797 DPP7Q9UHL4 492 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 NR2E1Q9Y466 385 aa17.08■□□□□ 0.32
VPS39-203ENST00000561797 TISP43B9A030 160 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 TRAPPC3O43617 180 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 RFPL2O75678 378 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 GAP43P17677 238 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 COL9A1P20849 921 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 TKTP29401 623 aaKnown RBP17.07■□□□□ 0.32
VPS39-203ENST00000561797 ABCD1P33897 745 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 PPP2R3AQ06190 1150 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 HERC4Q5GLZ8 1057 aaPredicted RBP17.07■□□□□ 0.32
VPS39-203ENST00000561797 LILRA6Q6PI73 481 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 MAP4K3Q8IVH8 894 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 TMEM130Q8N3G9 435 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 DHX58Q96C10 678 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 KIF12Q96FN5 646 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 ST6GALNAC4Q9H4F1 302 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 RPF1Q9H9Y2 349 aaKnown RBP17.07■□□□□ 0.32
VPS39-203ENST00000561797 PLEKHA5Q9HAU0 1116 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 PANK4Q9NVE7 773 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 TUBGCP4Q9UGJ1 667 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 NUB1Q9Y5A7 615 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 MUC3AQ02505 3323 aa17.07■□□□□ 0.32
VPS39-203ENST00000561797 A0A0B4J269 797 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 TTC26A0AVF1 554 aa17.06■□□□□ 0.32
VPS39-203ENST00000561797 LACTBL1A8MY62 500 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms