RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 KIAA1468Q9P260 1216 aa15.39■□□□□ 0.05
LDLR-213ENST00000560502 FNIP2Q9P278 1114 aa15.39■□□□□ 0.05
LDLR-213ENST00000560502 WNT16Q9UBV4 365 aa15.39■□□□□ 0.05
LDLR-213ENST00000560502 CCDC39Q9UFE4 941 aa15.39■□□□□ 0.05
LDLR-213ENST00000560502 FBXL21Q9UKT6 434 aa15.39■□□□□ 0.05
LDLR-213ENST00000560502 VPS13AQ96RL7 3174 aa15.39■□□□□ 0.05
LDLR-213ENST00000560502 DMDP11532 3685 aa15.39■□□□□ 0.05
LDLR-213ENST00000560502 A0A1B0GUA9 196 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 KRBA1A5PL33 1030 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 POLR2DO15514 142 aaKnown RBP15.38■□□□□ 0.05
LDLR-213ENST00000560502 TGM5O43548 720 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 ACTN4O43707 911 aaKnown RBP15.38■□□□□ 0.05
LDLR-213ENST00000560502 MYL1P05976 194 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 AKAP5P24588 427 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 GBP2P32456 591 aaPredicted RBP15.38■□□□□ 0.05
LDLR-213ENST00000560502 DEKP35659 375 aaKnown RBP15.38■□□□□ 0.05
LDLR-213ENST00000560502 NCBP1Q09161 790 aaKnown RBP15.38■□□□□ 0.05
LDLR-213ENST00000560502 ANGPT1Q15389 498 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 IL17AQ16552 155 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 USP41Q3LFD5 358 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 SLC27A1Q6PCB7 646 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 HACE1Q8IYU2 909 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 NXPE3Q969Y0 559 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 TRIM6Q9C030 488 aaPredicted RBP15.38■□□□□ 0.05
LDLR-213ENST00000560502 NT5C3AQ9H0P0 336 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 POLR3FQ9H1D9 316 aaPredicted RBP15.38■□□□□ 0.05
LDLR-213ENST00000560502 ANO10Q9NW15 660 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 ZDHHC7Q9NXF8 308 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 ADAM28Q9UKQ2 775 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 PCDHA12Q9UN75 941 aa15.38■□□□□ 0.05
LDLR-213ENST00000560502 ANHXE9PGG2 379 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 NPTXRO95502 500 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 CFHP08603 1231 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 SPATA31D3P0C874 917 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 MYBP10242 640 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 SRFP11831 508 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 UBA7P41226 1012 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 PPP4R3CPQ6ZMV5 832 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 SPATA31D4Q6ZUB0 917 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 CDR2LQ86X02 465 aaPredicted RBP15.37■□□□□ 0.05
LDLR-213ENST00000560502 PALB2Q86YC2 1186 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 SLC44A3Q8N4M1 653 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 TRIML1Q8N9V2 468 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 RIN2Q8WYP3 895 aaPredicted RBP15.37■□□□□ 0.05
LDLR-213ENST00000560502 EPSTI1Q96J88 318 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 PRKD2Q9BZL6 878 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 TTC12Q9H892 705 aaPredicted RBP15.37■□□□□ 0.05
LDLR-213ENST00000560502 OTOGLQ3ZCN5 2332 aa15.37■□□□□ 0.05
LDLR-213ENST00000560502 SMC2O95347 1197 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 XRCC6P12956 609 aaKnown RBP eCLIP15.36■□□□□ 0.05
LDLR-213ENST00000560502 LAMP2P13473 410 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 CREMQ03060 361 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 HTR4Q13639 388 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 POSTNQ15063 836 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 SPECC1Q5M775 1068 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 RTP2Q5QGT7 225 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 CDCA2Q69YH5 1023 aaPredicted RBP15.36■□□□□ 0.05
LDLR-213ENST00000560502 KCTD17Q8N5Z5 321 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 FAM200AQ8TCP9 573 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 PIGOQ8TEQ8 1089 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 ANP32BQ92688 251 aaKnown RBP15.36■□□□□ 0.05
LDLR-213ENST00000560502 PRIMPOLQ96LW4 560 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 PAAF1Q9BRP4 392 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 NAT10Q9H0A0 1025 aaKnown RBP15.36■□□□□ 0.05
LDLR-213ENST00000560502 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.36■□□□□ 0.05
LDLR-213ENST00000560502 KLK14Q9P0G3 267 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 CACNG4Q9UBN1 327 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 FBXW11Q9UKB1 542 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 TRIP11Q15643 1979 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 NOTCH4Q99466 2003 aa15.36■□□□□ 0.05
LDLR-213ENST00000560502 MIA3Q5JRA6 1907 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 CACNA1IQ9P0X4 2223 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 USO1O60763 962 aaKnown RBP15.35■□□□□ 0.05
LDLR-213ENST00000560502 ZMYND10O75800 440 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 SPATA31C1P0DKV0 1188 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 RPL17P18621 184 aaKnown RBP15.35■□□□□ 0.05
LDLR-213ENST00000560502 HSP90AA2PQ14568 343 aaPredicted RBP15.35■□□□□ 0.05
LDLR-213ENST00000560502 E2F4Q16254 413 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 FAM187BQ17R55 369 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 NT5DC1Q5TFE4 455 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 RABGGTAQ92696 567 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 DHX58Q96C10 678 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 CALML4Q96GE6 196 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 GTPBP4Q9BZE4 634 aaKnown RBP15.35■□□□□ 0.05
LDLR-213ENST00000560502 RBSNQ9H1K0 784 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 FZD8Q9H461 694 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 TBC1D17Q9HA65 648 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 PIDD1Q9HB75 910 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 GPRC5CQ9NQ84 441 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 PRMT7Q9NVM4 692 aaPredicted RBP15.35■□□□□ 0.05
LDLR-213ENST00000560502 STK17AQ9UEE5 414 aa15.35■□□□□ 0.05
LDLR-213ENST00000560502 SF3B1O75533 1304 aaKnown RBP eCLIP15.35■□□□□ 0.05
LDLR-213ENST00000560502 A0A087WWV3 80 aa15.34■□□□□ 0.05
LDLR-213ENST00000560502 POTEMA6NI47 508 aa15.34■□□□□ 0.05
LDLR-213ENST00000560502 TTLL13PA6NNM8 815 aa15.34■□□□□ 0.05
LDLR-213ENST00000560502 PTGESO14684 152 aa15.34■□□□□ 0.05
LDLR-213ENST00000560502 STAT6P42226 847 aa15.34■□□□□ 0.05
LDLR-213ENST00000560502 TXKP42681 527 aa15.34■□□□□ 0.05
LDLR-213ENST00000560502 FOXK2Q01167 660 aa15.34■□□□□ 0.05
LDLR-213ENST00000560502 TUSC3Q13454 348 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms