RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 OSTNP61366 133 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 DDR1Q08345 913 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 KLHL38Q2WGJ6 581 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 RINT1Q6NUQ1 792 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 TRIM42Q8IWZ5 723 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 SLC26A7Q8TE54 656 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 RBM41Q96IZ5 413 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 TSSK1BQ9BXA7 367 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 RXFP1Q9HBX9 757 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 DDX3XO00571 662 aaKnown RBP eCLIP7.53□□□□□ -1.2
USP3-210ENST00000559192 GNA15P30679 374 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 MTERF2Q49AM1 385 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 RSPH3Q86UC2 560 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 ERICH1Q86X53 443 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 PPM1NQ8N819 430 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 C4orf32Q8N8J7 132 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 SDCCAG3Q96C92 435 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 CCDC124Q96CT7 223 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 PI4K2AQ9BTU6 479 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 MYLK2Q9H1R3 596 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 NXF1Q9UBU9 619 aaKnown RBP7.53□□□□□ -1.2
USP3-210ENST00000559192 FIS1Q9Y3D6 152 aa7.53□□□□□ -1.2
USP3-210ENST00000559192 DENND3A2RUS2 1198 aa7.52□□□□□ -1.2
USP3-210ENST00000559192 WDR46O15213 610 aaKnown RBP7.52□□□□□ -1.2
USP3-210ENST00000559192 TMEM191BP0C7N4 346 aa7.52□□□□□ -1.2
USP3-210ENST00000559192 RALAP11233 206 aa7.52□□□□□ -1.2
USP3-210ENST00000559192 RFX1P22670 979 aa7.52□□□□□ -1.2
USP3-210ENST00000559192 OCA2Q04671 838 aa7.52□□□□□ -1.2
USP3-210ENST00000559192 THOC5Q13769 683 aaKnown RBP7.52□□□□□ -1.2
USP3-210ENST00000559192 KRT39Q6A163 491 aa7.52□□□□□ -1.2
USP3-210ENST00000559192 LRRC55Q6ZSA7 311 aa7.52□□□□□ -1.2
USP3-210ENST00000559192 MIGA2Q7L4E1 593 aa7.52□□□□□ -1.2
USP3-210ENST00000559192 ATP8B4Q8TF62 1192 aa7.52□□□□□ -1.2
USP3-210ENST00000559192 PURBQ96QR8 312 aaKnown RBP7.52□□□□□ -1.2
USP3-210ENST00000559192 SCHIP1Q9P0W5 487 aaPredicted RBP7.52□□□□□ -1.2
USP3-210ENST00000559192 SLIT3O75094 1523 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 ATXN2Q99700 1313 aaKnown RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 A0A0A6YYK5 440 aaPredicted RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 RARGP13631 454 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 NPEPPSP55786 919 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 PSMC1P62191 440 aaKnown RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 FUT2Q10981 343 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 NKX1-1Q15270 411 aaPredicted RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 ERMARDQ5T6L9 678 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 SLC30A10Q6XR72 485 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 TAS2R14Q9NYV8 317 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 PI4KBQ9UBF8 816 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 PCSK1NQ9UHG2 260 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 CHD2O14647 1828 aaKnown RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 DNM1LO00429 736 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 CES2O00748 559 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 TNNC2P02585 160 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 SERPINB2P05120 415 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 EEF1B2P24534 225 aaKnown RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 NT5C2P49902 561 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 ITPK1Q13572 414 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 HIF1AQ16665 826 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 TRIM60Q495X7 471 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 EAPPQ56P03 285 aaPredicted RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 RCSD1Q6JBY9 416 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 TXNRD3Q86VQ6 643 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 IQCKQ8N0W5 287 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 CHCHD3Q9NX63 227 aaKnown RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 PSMC3IPQ9P2W1 217 aaPredicted RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 H3BRJ5 948 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 CCDC22O60826 627 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 CASP5P51878 434 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 MRPS35P82673 323 aaKnown RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 TFAMQ00059 246 aaKnown RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 ALCAMQ13740 583 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 TMEM119Q4V9L6 283 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 FAM196AQ6ZSG2 479 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 SYDE1Q6ZW31 735 aaPredicted RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 MTDHQ86UE4 582 aaKnown RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 ARHGAP18Q8N392 663 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 CEP19Q96LK0 163 aa7.52□□□□□ -1.21
USP3-210ENST00000559192 SMG5Q9UPR3 1016 aaKnown RBP7.52□□□□□ -1.21
USP3-210ENST00000559192 POLR2BP30876 1174 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 SLC8A3P57103 927 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 EPHA7Q15375 998 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 ACBD5Q5T8D3 534 aaPredicted RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 MCF2L2Q86YR7 1114 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 FLCNQ8NFG4 579 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 NRBF2Q96F24 287 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 TTYH3Q9C0H2 523 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 UTP6Q9NYH9 597 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 F5H6K3 240 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 O00370 1275 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 ZCCHC18P0CG32 403 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 EPHB2P29323 1055 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 VHLP40337 213 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 KLRC3Q07444 240 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 HAUS6Q7Z4H7 955 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 WDR75Q8IWA0 830 aaKnown RBP7.51□□□□□ -1.21
USP3-210ENST00000559192 CDAN1Q8IWY9 1227 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 ATP11CQ8NB49 1132 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 AGPAT3Q9NRZ7 376 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 GIMAP4Q9NUV9 329 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 SEL1LQ9UBV2 794 aa7.51□□□□□ -1.21
USP3-210ENST00000559192 DAGLAQ9Y4D2 1042 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms