RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 KLF10Q13118 480 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 ODF1Q14990 250 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 UBXN2BQ14CS0 331 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 ATP2B3Q16720 1220 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 TIGD2Q4W5G0 525 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 PDCD4Q53EL6 469 aaKnown RBP4.91□□□□□ -1.62
VPS13C-207ENST00000558919 AGAP9Q5VTM2 703 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 MED25Q71SY5 747 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 ZFPM1Q8IX07 1006 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 RHOT2Q8IXI1 618 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 ULK2Q8IYT8 1036 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 NEU4Q8WWR8 484 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-207ENST00000558919 LARP4BQ92615 738 aaKnown RBP4.91□□□□□ -1.62
VPS13C-207ENST00000558919 SMAD5Q99717 465 aaKnown RBP4.91□□□□□ -1.62
VPS13C-207ENST00000558919 PRRX2Q99811 253 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 REXO4Q9GZR2 422 aaKnown RBP4.91□□□□□ -1.62
VPS13C-207ENST00000558919 AKIP1Q9NQ31 210 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 TDP1Q9NUW8 608 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 DKK2Q9UBU2 259 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 LIMCH1Q9UPQ0 1083 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 ATP11BQ9Y2G3 1177 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 USP15Q9Y4E8 981 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-207ENST00000558919 HS3ST4Q9Y661 456 aa4.91□□□□□ -1.62
VPS13C-207ENST00000558919 TMEM200CA6NKL6 621 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 ZNF185O15231 689 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 NCR1O76036 304 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 ABHD16AO95870 558 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 RPLP2P05387 115 aaKnown RBP4.9□□□□□ -1.63
VPS13C-207ENST00000558919 ALAS1P13196 640 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 EDNRBP24530 442 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 ZFP36P26651 326 aaKnown RBP4.9□□□□□ -1.63
VPS13C-207ENST00000558919 BMPR1AP36894 532 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 FAM189BP81408 668 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 TARDBPQ13148 414 aaKnown RBP eCLIP4.9□□□□□ -1.63
VPS13C-207ENST00000558919 FHL2Q14192 279 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 BEAN1Q3B7T3 259 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 LY6G5CQ5SRR4 150 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 DACT2Q5SW24 774 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 ZNF529Q6P280 563 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 NEU1Q99519 415 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 MYOCQ99972 504 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.9□□□□□ -1.63
VPS13C-207ENST00000558919 PCDHA13Q9Y5I0 950 aa4.9□□□□□ -1.63
VPS13C-207ENST00000558919 CCDC154A6NI56 674 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 SNUPNO95149 360 aaKnown RBP4.89□□□□□ -1.63
VPS13C-207ENST00000558919 ZRANB2O95218 330 aaKnown RBP eCLIP4.89□□□□□ -1.63
VPS13C-207ENST00000558919 HLA-DOAP06340 250 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 GCSHP23434 173 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 TGFB2P61812 414 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 IGBP1P78318 339 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 CREMQ03060 361 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 DPTQ07507 201 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 RAB39AQ14964 217 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 PTPAQ15257 358 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 C3orf36Q3SXR2 165 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 TMEM240Q5SV17 173 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 ARMC6Q6NXE6 501 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 KCNV1Q6PIU1 500 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 RSPH3Q86UC2 560 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 NLGN4YQ8NFZ3 816 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-207ENST00000558919 IFI44Q8TCB0 444 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 PROKR1Q8TCW9 393 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 CHMP4CQ96CF2 233 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 PHACTR3Q96KR7 559 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 MRIQ9BWK5 157 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 C11orf54Q9H0W9 315 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-207ENST00000558919 KLHL11Q9NVR0 708 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 FBXO34Q9NWN3 711 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 ING1Q9UK53 422 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-207ENST00000558919 RUVBL1Q9Y265 456 aaKnown RBP4.89□□□□□ -1.63
VPS13C-207ENST00000558919 CFAP20Q9Y6A4 193 aaKnown RBP4.89□□□□□ -1.63
VPS13C-207ENST00000558919 FPGT-TNNI3KV9GXZ4 949 aa4.89□□□□□ -1.63
VPS13C-207ENST00000558919 LOC105371045A0A1W2PR82 267 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 TMEM191CA6NGB0 347 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 MARCH11A6NNE9 402 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 CFIP05156 583 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 HMGA2P52926 109 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 IL10RAQ13651 578 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 UAP1L1Q3KQV9 507 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 TSHZ3Q63HK5 1081 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 ZNF627Q7L945 461 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 UBE3BQ7Z3V4 1068 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 ZBTB46Q86UZ6 589 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 ARHGEF19Q8IW93 802 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 CMTR2Q8IYT2 770 aaKnown RBP4.88□□□□□ -1.63
VPS13C-207ENST00000558919 MIER2Q8N344 545 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 FITM2Q8N6M3 262 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 OR56A1Q8NGH5 318 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 TMX3Q96JJ7 454 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 MRGPRX4Q96LA9 322 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 TEX101Q9BY14 249 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 CALCOCO1Q9P1Z2 691 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 SERPINB13Q9UIV8 391 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 PCDHB1Q9Y5F3 818 aa4.88□□□□□ -1.63
VPS13C-207ENST00000558919 CENPVL1A0A0U1RR11 272 aa4.87□□□□□ -1.63
VPS13C-207ENST00000558919 TCRBV7S2A1N4TA0A589 114 aa4.87□□□□□ -1.63
VPS13C-207ENST00000558919 NDUFA10O95299 355 aa4.87□□□□□ -1.63
VPS13C-207ENST00000558919 MTHFD1P11586 935 aaKnown RBP4.87□□□□□ -1.63
VPS13C-207ENST00000558919 CKBP12277 381 aa4.87□□□□□ -1.63
VPS13C-207ENST00000558919 NEK2P51955 445 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms