RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 PLTPP55058 493 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 MGAT5Q09328 741 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 STRN3Q13033 797 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 VPS36Q86VN1 386 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 JAMLQ86YT9 394 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 ANKLE1Q8NAG6 615 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 PPFIBP2Q8ND30 876 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 FBXO25Q8TCJ0 367 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 EPS8L3Q8TE67 593 aaKnown RBP11.61□□□□□ -0.55
USP3-206ENST00000558157 CHURC1Q8WUH1 139 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 ARHGEF2Q92974 986 aaKnown RBP11.61□□□□□ -0.55
USP3-206ENST00000558157 OLFM3Q96PB7 478 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 CENPKQ9BS16 269 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 SPATA16Q9BXB7 569 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 TBC1D10AQ9BXI6 508 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 CCDC113Q9H0I3 377 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 RPAP3Q9H6T3 665 aaPredicted RBP11.61□□□□□ -0.55
USP3-206ENST00000558157 STK17AQ9UEE5 414 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 LNPEPQ9UIQ6 1025 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 PCDHA6Q9UN73 950 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 AFG3L2Q9Y4W6 797 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 PCDHA8Q9Y5H6 950 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.61□□□□□ -0.55
USP3-206ENST00000558157 CCDC194A0A1B0GVG4 234 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 PP2D1A8MPX8 630 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 CETN3O15182 167 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 ATP9AO75110 1047 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 TMCC1O94876 653 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 CD151P48509 253 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 ADCY7P51828 1080 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 LSAMPQ13449 338 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 CCDC6Q16204 474 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 USH1GQ495M9 461 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 LDHDQ86WU2 507 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 FBXO11Q86XK2 927 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 NELFCDQ8IXH7 590 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 SLC17A8Q8NDX2 589 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 UCMAQ8WVF2 138 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 RANBP17Q9H2T7 1088 aaKnown RBP11.6□□□□□ -0.55
USP3-206ENST00000558157 SEMA4AQ9H3S1 761 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 ZNF408Q9H9D4 720 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 NENFQ9UMX5 172 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 G3BP2Q9UN86 482 aaKnown RBP11.6□□□□□ -0.55
USP3-206ENST00000558157 ZNF510Q9Y2H8 683 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 PCDHA1Q9Y5I3 950 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 ACTL7BQ9Y614 415 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 LOC285556D6RIA3 1793 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 SMIM23A6NLE4 172 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 MAGEB2O15479 319 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 TCEA3O75764 348 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 MYBL1P10243 752 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 GNA11P29992 359 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 CHRNA3P32297 505 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 SERPINB4P48594 390 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 ORC2Q13416 577 aaPredicted RBP11.6□□□□□ -0.55
USP3-206ENST00000558157 SNX30Q5VWJ9 437 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 ALKBH5Q6P6C2 394 aaKnown RBP11.6□□□□□ -0.55
USP3-206ENST00000558157 CCDC174Q6PII3 467 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 VSTM1Q6UX27 236 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 SV2BQ7L1I2 683 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 ANKRD13AQ8IZ07 590 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 FAM133AQ8N9E0 248 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 LRRC15Q8TF66 581 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 C12orf42Q96LP6 360 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 AMNQ9BXJ7 453 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 TRIM31Q9BZY9 425 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 MYLK2Q9H1R3 596 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 GANQ9H2C0 597 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 SAR1AQ9NR31 198 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 DDX43Q9NXZ2 648 aaKnown RBP11.6□□□□□ -0.55
USP3-206ENST00000558157 GRHL1Q9NZI5 618 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 PCYOX1Q9UHG3 505 aa11.6□□□□□ -0.55
USP3-206ENST00000558157 H2AFZP0C0S5 128 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 PTPN4P29074 926 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 STX2P32856 288 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 PTK2Q05397 1052 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 CNPY1Q3B7I2 92 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 ZNF568Q3ZCX4 644 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 RASIP1Q5U651 963 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 H2AFVQ71UI9 128 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 CYFIP1Q7L576 1253 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 SYCP3Q8IZU3 236 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 PHC3Q8NDX5 983 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 SLC7A6OSQ96CW6 309 aaPredicted RBP11.59□□□□□ -0.55
USP3-206ENST00000558157 CALML4Q96GE6 196 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 TUBB6Q9BUF5 446 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 PITPNM3Q9BZ71 974 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 ZCWPW1Q9H0M4 648 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 DENND2DQ9H6A0 471 aaPredicted RBP11.59□□□□□ -0.55
USP3-206ENST00000558157 TMEM260Q9NX78 707 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 BIN2Q9UBW5 565 aaPredicted RBP11.59□□□□□ -0.55
USP3-206ENST00000558157 ZNF212Q9UDV6 495 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 RLFQ13129 1914 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 C19orf81C9J6K1 198 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 DEUP1Q05D60 604 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 SLC34A1Q06495 639 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 MCL1Q07820 350 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 AP1B1Q10567 949 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 UBE2SQ16763 222 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 CGB2Q6NT52 195 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms