RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 RWDD2BP57060 319 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 WDR4P57081 412 aaKnown RBP13.16□□□□□ -0.3
LDLR-205ENST00000557933 GAD2Q05329 585 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 THEMIS2Q5TEJ8 643 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 SPOPLQ6IQ16 392 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 PADI6Q6TGC4 694 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 ZCWPW1Q9H0M4 648 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 TAOK3Q9H2K8 898 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 EBF2Q9HAK2 575 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 KLHL14Q9P2G3 628 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 SAE1Q9UBE0 346 aaPredicted RBP13.16□□□□□ -0.3
LDLR-205ENST00000557933 PCYOX1Q9UHG3 505 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 ANAPC5Q9UJX4 755 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 GRID1Q9ULK0 1009 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 SLX4Q8IY92 1834 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 RTN2O75298 545 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 IFNB1P01574 187 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 CYP3A7P24462 503 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 CRKP46108 304 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 RASA3Q14644 834 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 BMT2Q1RMZ1 405 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 TMEM63BQ5T3F8 832 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 ANKMY2Q8IV38 441 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 CNKSR1Q969H4 720 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 TEKT1Q969V4 418 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 HSPBP1Q9NZL4 362 aa13.16□□□□□ -0.3
LDLR-205ENST00000557933 FOCADQ5VW36 1801 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 CLRN2A0PK11 232 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 PODXLO00592 558 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 ATF2P15336 505 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 ATF7P17544 494 aaPredicted RBP13.15□□□□□ -0.3
LDLR-205ENST00000557933 KRT15P19012 456 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 MAPK4P31152 587 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 NOP14P78316 857 aaKnown RBP13.15□□□□□ -0.3
LDLR-205ENST00000557933 BNIP1Q12981 228 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 ZNF268Q14587 947 aaPredicted RBP13.15□□□□□ -0.3
LDLR-205ENST00000557933 KIF22Q14807 665 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 SLMAPQ14BN4 828 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 ABCB5Q2M3G0 1257 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 GNPTABQ3T906 1256 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 CPXCR1Q8N123 301 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 IL31RAQ8NI17 732 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 PARD3BQ8TEW8 1205 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 UPF1Q92900 1129 aaKnown RBP eCLIP13.15□□□□□ -0.32e-8■■■■■ 35.9
LDLR-205ENST00000557933 FHDC1Q9C0D6 1143 aaPredicted RBP13.15□□□□□ -0.3
LDLR-205ENST00000557933 KIAA1683Q9H0B3 1180 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 NUMBLQ9Y6R0 609 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 DNAH12Q6ZR08 3092 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 FGFR1P11362 822 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 ATP2A2P16615 1042 aaKnown RBP13.15□□□□□ -0.3
LDLR-205ENST00000557933 NRLP54845 237 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 CRYMQ14894 314 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 EFTUD2Q15029 972 aaKnown RBP eCLIP13.15□□□□□ -0.31e-6■■■■□ 19.3
LDLR-205ENST00000557933 FOXR2Q6PJQ5 311 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 INTS8Q75QN2 995 aaKnown RBP13.15□□□□□ -0.3
LDLR-205ENST00000557933 C11orf70Q9BRQ4 267 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 GLIS2Q9BZE0 524 aaPredicted RBP13.15□□□□□ -0.3
LDLR-205ENST00000557933 WDR11Q9BZH6 1224 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 VPS33BQ9H267 617 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 NKIRAS1Q9NYS0 192 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 ARL2BPQ9Y2Y0 163 aa13.15□□□□□ -0.3
LDLR-205ENST00000557933 ADAMTSL1Q8N6G6 1762 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 A0A1W2PPM1 405 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 H0YIN7 160 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 TTC4O95801 387 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 CYP11B1P15538 503 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 RAD23BP54727 409 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 LACTBP83111 547 aaPredicted RBP13.14□□□□□ -0.31
LDLR-205ENST00000557933 PKN2Q16513 984 aaKnown RBP13.14□□□□□ -0.31
LDLR-205ENST00000557933 Q4G0T1 1027 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 LONP2Q86WA8 852 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 TBC1D22AQ8WUA7 517 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 MKL1Q969V6 931 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 FAM20AQ96MK3 541 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 SAYSD1Q9NPB0 183 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 FAM198AQ9UFP1 575 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 NOCTQ9UK39 431 aaKnown RBP13.14□□□□□ -0.31
LDLR-205ENST00000557933 CDK5RAP2Q96SN8 1893 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 GTPBP10A4D1E9 387 aaKnown RBP13.14□□□□□ -0.31
LDLR-205ENST00000557933 TCP10L2B9ZVM9 353 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 TAC1P20366 129 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 AP3B2Q13367 1082 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 P3H1Q32P28 736 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 FAM102BQ5T8I3 360 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 CAPRIN2Q6IMN6 1127 aaKnown RBP13.14□□□□□ -0.31
LDLR-205ENST00000557933 DTX3LQ8TDB6 740 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 C7orf43Q8WVR3 580 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 FAM163AQ96GL9 167 aaPredicted RBP13.14□□□□□ -0.31
LDLR-205ENST00000557933 PRR11Q96HE9 360 aaPredicted RBP13.14□□□□□ -0.31
LDLR-205ENST00000557933 VPS37BQ9H9H4 285 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 TELO2Q9Y4R8 837 aa13.14□□□□□ -0.31
LDLR-205ENST00000557933 IPO5O00410 1097 aaKnown RBP13.13□□□□□ -0.31
LDLR-205ENST00000557933 PSMD10O75832 226 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 OAS1P00973 400 aaKnown RBP13.13□□□□□ -0.31
LDLR-205ENST00000557933 TGFB2P61812 414 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 DYNLT1P63172 113 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 ATP11AP98196 1134 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 SEZ6Q53EL9 994 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 IZUMO3Q5VZ72 239 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 RFWD3Q6PCD5 774 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms