RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 CYP26C1Q6V0L0 522 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 GET4Q7L5D6 327 aaPredicted RBP6.54□□□□□ -1.36
VPS33B-207ENST00000557470 DHX32Q7L7V1 743 aaKnown RBP6.54□□□□□ -1.36
VPS33B-207ENST00000557470 MIER3Q7Z3K6 550 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 COLGALT2Q8IYK4 626 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 RNF168Q8IYW5 571 aaPredicted RBP6.54□□□□□ -1.36
VPS33B-207ENST00000557470 CCDC12Q8WUD4 166 aaPredicted RBP6.54□□□□□ -1.36
VPS33B-207ENST00000557470 NXPE3Q969Y0 559 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 PKNOX2Q96KN3 472 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 B3GALT6Q96L58 329 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 FAM193BQ96PV7 902 aaPredicted RBP6.54□□□□□ -1.36
VPS33B-207ENST00000557470 ARHGAP9Q9BRR9 750 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 TEKT3Q9BXF9 490 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 INO80BQ9C086 356 aaPredicted RBP6.54□□□□□ -1.36
VPS33B-207ENST00000557470 NT5C3AQ9H0P0 336 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 MINDY3Q9H8M7 445 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 RXFP1Q9HBX9 757 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 SLC2A4RGQ9NR83 387 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS33B-207ENST00000557470 KANSL3Q9P2N6 904 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 DPP7Q9UHL4 492 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 NAP1L2Q9ULW6 460 aaPredicted RBP6.54□□□□□ -1.36
VPS33B-207ENST00000557470 NUMBLQ9Y6R0 609 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 COL4A3Q01955 1670 aa6.54□□□□□ -1.36
VPS33B-207ENST00000557470 USP24Q9UPU5 2620 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 MAP1BP46821 2468 aaKnown RBP6.53□□□□□ -1.36
VPS33B-207ENST00000557470 CFAP47Q6ZTR5 3102 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 ARL5CA6NH57 179 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 TGM5O43548 720 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 GAS2O43903 313 aaKnown RBP6.53□□□□□ -1.36
VPS33B-207ENST00000557470 KINO60870 393 aaKnown RBP6.53□□□□□ -1.36
VPS33B-207ENST00000557470 ABL1P00519 1130 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 GNA11P29992 359 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 MLH1P40692 756 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 OR1G1P47890 313 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 STARD6P59095 220 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 GPC5P78333 572 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 DSG1Q02413 1049 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 DSC1Q08554 894 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 RAD51AP2Q09MP3 1159 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 RNF20Q5VTR2 975 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 B3GNT9Q6UX72 402 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 ANO5Q75V66 913 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 PALB2Q86YC2 1186 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 GLYCTKQ8IVS8 523 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 SMG8Q8ND04 991 aaKnown RBP6.53□□□□□ -1.36
VPS33B-207ENST00000557470 RDM1Q8NG50 284 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 BICD2Q8TD16 824 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 PHKBQ93100 1093 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 SPACA7Q96KW9 195 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 RPP25Q9BUL9 199 aaKnown RBP6.53□□□□□ -1.36
VPS33B-207ENST00000557470 EIF2AQ9BY44 585 aaKnown RBP6.53□□□□□ -1.36
VPS33B-207ENST00000557470 PLEKHA4Q9H4M7 779 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 PIDD1Q9HB75 910 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 CHST7Q9NS84 486 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 ZDHHC7Q9NXF8 308 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 VPS54Q9P1Q0 977 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 NXF1Q9UBU9 619 aaKnown RBP6.53□□□□□ -1.36
VPS33B-207ENST00000557470 SSX2IPQ9Y2D8 614 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 MTF2Q9Y483 593 aaPredicted RBP6.53□□□□□ -1.36
VPS33B-207ENST00000557470 COL4A3BPQ9Y5P4 624 aa6.53□□□□□ -1.36
VPS33B-207ENST00000557470 CCDC196A0A1B0GTZ2 297 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 PRPF3O43395 683 aaKnown RBP6.52□□□□□ -1.37
VPS33B-207ENST00000557470 TDP2O95551 362 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 SRGAP2CP0DJJ0 459 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 ITGA4P13612 1032 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 CPA1P15085 419 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 RPL17P18621 184 aaKnown RBP6.52□□□□□ -1.37
VPS33B-207ENST00000557470 SCNN1GP51170 649 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 USP11P51784 963 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 ATXN1P54253 815 aaKnown RBP6.52□□□□□ -1.37
VPS33B-207ENST00000557470 NPEPPSP55786 919 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 ANAPC15P60006 121 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 PSMC5P62195 406 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 LAMTOR4Q0VGL1 99 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 SNW1Q13573 536 aaKnown RBP6.52□□□□□ -1.37
VPS33B-207ENST00000557470 MRPL58Q14197 206 aaKnown RBP6.52□□□□□ -1.37
VPS33B-207ENST00000557470 ZNF528Q3MIS6 628 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 Q4G0T1 1027 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 CRTC2Q53ET0 693 aaPredicted RBP6.52□□□□□ -1.37
VPS33B-207ENST00000557470 LILRA6Q6PI73 481 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 PARM1Q6UWI2 310 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 SRGAP1Q7Z6B7 1085 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 CCDC148Q8NFR7 591 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 C1orf216Q8TAB5 229 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 ETNPPLQ8TBG4 499 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 TBCKQ8TEA7 893 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 HDAC7Q8WUI4 952 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 PRPF31Q8WWY3 499 aaKnown RBP6.52□□□□□ -1.37
VPS33B-207ENST00000557470 SLC7A3Q8WY07 619 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 FGF14Q92915 247 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 KCNB2Q92953 911 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 TMEM143Q96AN5 459 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 SHDQ96IW2 340 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 GAD1Q99259 594 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 DDX23Q9BUQ8 820 aaKnown RBP6.52□□□□□ -1.37
VPS33B-207ENST00000557470 GPR62Q9BZJ7 368 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 SPATA6Q9NWH7 488 aaPredicted RBP6.52□□□□□ -1.37
VPS33B-207ENST00000557470 MIOSQ9NXC5 875 aa6.52□□□□□ -1.37
VPS33B-207ENST00000557470 NCDNQ9UBB6 729 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms