RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 GRID1Q9ULK0 1009 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 SKAP2O75563 359 aaPredicted RBP18.44■□□□□ 0.54
SYNE3-204ENST00000555759 TRIM49P0CI25 452 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 TRIM49CP0CI26 452 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 HORMAD1Q86X24 394 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.44■□□□□ 0.54
SYNE3-204ENST00000555759 FRMD8Q9BZ67 464 aaPredicted RBP18.44■□□□□ 0.54
SYNE3-204ENST00000555759 KLHL4Q9C0H6 718 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 NOD1Q9Y239 953 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 POTEFA5A3E0 1075 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 A8MXQ7 604 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 POTEIP0CG38 1075 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 SCNN1DP51172 638 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 KCNMA1Q12791 1236 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 TTC33Q6PID6 262 aaPredicted RBP18.44■□□□□ 0.54
SYNE3-204ENST00000555759 POTEGQ6S5H5 508 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 POTEEQ6S8J3 1075 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 SNX2O60749 519 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 SRP72O76094 671 aaKnown RBP18.44■□□□□ 0.54
SYNE3-204ENST00000555759 HERVK_113P62684 666 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 CYGBQ8WWM9 190 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 TRAPPC9Q96Q05 1148 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 CAAP1Q9H8G2 361 aa18.44■□□□□ 0.54
SYNE3-204ENST00000555759 ZC3H7BQ9UGR2 993 aaKnown RBP18.44■□□□□ 0.54
SYNE3-204ENST00000555759 COMTP21964 271 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 FMO5P49326 533 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 CCDC24Q8N4L8 307 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 TTC39CQ8N584 583 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 TMA16Q96EY4 203 aaKnown RBP18.43■□□□□ 0.54
SYNE3-204ENST00000555759 WHRNQ9P202 907 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 AP3B1O00203 1094 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 EYA4O95677 639 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 SERPINB8P50452 374 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 MARCOQ9UEW3 520 aaPredicted RBP18.43■□□□□ 0.54
SYNE3-204ENST00000555759 CAPN6Q9Y6Q1 641 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 MTERF2Q49AM1 385 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 EPS8L3Q8TE67 593 aaKnown RBP18.43■□□□□ 0.54
SYNE3-204ENST00000555759 ARHGEF26Q96DR7 871 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 CNBD2Q96M20 576 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 AP3M2P53677 418 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 PTPAQ15257 358 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 LRRN4CLQ8ND94 238 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 UGGT1Q9NYU2 1555 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 A0A1B0GW55 424 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 IQCA1LA6NCM1 817 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 AIM2O14862 343 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 CYP26A1O43174 497 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 DUX4L2P0CJ85 424 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 DUX4L3P0CJ86 424 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 DUX4L4P0CJ87 422 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 DUX4L5P0CJ88 424 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 DUX4L6P0CJ89 424 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 DUX4L7P0CJ90 424 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 PSMC3P17980 439 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 SLC34A1Q06495 639 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 CAPRIN1Q14444 709 aaKnown RBP18.43■□□□□ 0.54
SYNE3-204ENST00000555759 FAM47CQ5HY64 1035 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 IZUMO2Q6UXV1 221 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 USP49Q70CQ1 688 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 ZBTB33Q86T24 672 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 GIMAP4Q9NUV9 329 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 DUX4Q9UBX2 424 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 PCSK1NQ9UHG2 260 aa18.43■□□□□ 0.54
SYNE3-204ENST00000555759 WEE2P0C1S8 567 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 IFNA8P32881 189 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 POU5F1BQ06416 359 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 AASDHQ4L235 1098 aaPredicted RBP18.42■□□□□ 0.54
SYNE3-204ENST00000555759 CDKAL1Q5VV42 579 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 C3orf62Q6ZUJ4 267 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 SYBUQ9NX95 663 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 ANKARQ7Z5J8 1434 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 USP17L5A8MUK1 530 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 FASTKD1Q53R41 847 aaKnown RBP18.42■□□□□ 0.54
SYNE3-204ENST00000555759 SPDYCQ5MJ68 293 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 SLC13A5Q86YT5 568 aaPredicted RBP18.42■□□□□ 0.54
SYNE3-204ENST00000555759 SENP7Q9BQF6 1050 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 TEX12Q9BXU0 123 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 COG4Q9H9E3 785 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 XPO7Q9UIA9 1087 aaKnown RBP18.42■□□□□ 0.54
SYNE3-204ENST00000555759 ARHGEF40Q8TER5 1519 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 WDR47O94967 919 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 KLK7P49862 253 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 HSPA2P54652 639 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 ELF3P78545 371 aaPredicted RBP18.42■□□□□ 0.54
SYNE3-204ENST00000555759 KLHDC7AQ5VTJ3 777 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 EIF1ADQ8N9N8 165 aaKnown RBP18.42■□□□□ 0.54
SYNE3-204ENST00000555759 C20orf96Q9NUD7 363 aaPredicted RBP18.42■□□□□ 0.54
SYNE3-204ENST00000555759 MAP3K4Q9Y6R4 1608 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 ZNF699Q32M78 642 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 CC2D2BQ6DHV5 1058 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 SPICE1Q8N0Z3 855 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 HPS3Q969F9 1004 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 BSDC1Q9NW68 430 aaPredicted RBP18.42■□□□□ 0.54
SYNE3-204ENST00000555759 TMEM260Q9NX78 707 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 BTBD7Q9P203 1132 aa18.42■□□□□ 0.54
SYNE3-204ENST00000555759 CES2O00748 559 aa18.41■□□□□ 0.54
SYNE3-204ENST00000555759 ACTR2P61160 394 aa18.41■□□□□ 0.54
SYNE3-204ENST00000555759 CPSF3Q9UKF6 684 aaKnown RBP18.41■□□□□ 0.54
SYNE3-204ENST00000555759 CDYLQ9Y232 598 aa18.41■□□□□ 0.54
SYNE3-204ENST00000555759 H0YIN7 160 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms