RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 PDE11AQ9HCR9 933 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 IL23AQ9NPF7 189 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 CNTN3Q9P232 1028 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 ITGA11Q9UKX5 1188 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 UBQLN1Q9UMX0 589 aaKnown RBP12.11□□□□□ -0.47
SHMT2-220ENST00000555634 TET1Q8NFU7 2136 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 TTC3P53804 2025 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 A0A1W2PQC6 194 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 CARNS1A5YM72 827 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 LRRC10BA6NIK2 292 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 LRRIQ3A6PVS8 624 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-220ENST00000555634 ADCY5O95622 1261 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 PTMAP06454 111 aaKnown RBP12.1□□□□□ -0.47
SHMT2-220ENST00000555634 KRT19P08727 400 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 CSF2RAP15509 400 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 AKAP5P24588 427 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 MLH1P40692 756 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 GCLMP48507 274 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 RNASELQ05823 741 aaKnown RBP12.1□□□□□ -0.47
SHMT2-220ENST00000555634 MYO1EQ12965 1108 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 GRIK3Q13003 919 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 ZBTB41Q5SVQ8 909 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 UBXN11Q5T124 520 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 SPECC1LQ69YQ0 1117 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 CRELD2Q6UXH1 353 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-220ENST00000555634 FBXL13Q8NEE6 735 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 ZNF397Q8NF99 534 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-220ENST00000555634 NEK11Q8NG66 645 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 NUP58Q9BVL2 599 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 MTMR12Q9C0I1 747 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 HAPLN2Q9GZV7 340 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 TMX1Q9H3N1 280 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 RTN4Q9NQC3 1192 aaKnown RBP12.1□□□□□ -0.47
SHMT2-220ENST00000555634 KANSL3Q9P2N6 904 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 HES2Q9Y543 173 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 ITIH6Q6UXX5 1313 aa12.1□□□□□ -0.47
SHMT2-220ENST00000555634 NLRC5Q86WI3 1866 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 TTC26A0AVF1 554 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 TRIM43BA6NCK2 446 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 ZBBXA8MT70 800 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 C9IYK1 514 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 ZC3H11AO75152 810 aaKnown RBP eCLIP12.09□□□□□ -0.47
SHMT2-220ENST00000555634 THP07101 528 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 PNPLA4P41247 253 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 CCDC173Q0VFZ6 552 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 TSR1Q2NL82 804 aaKnown RBP12.09□□□□□ -0.47
SHMT2-220ENST00000555634 MIIPQ5JXC2 388 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 JADE1Q6IE81 842 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 CACNA2D4Q7Z3S7 1137 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 MRPL10Q7Z7H8 261 aaKnown RBP12.09□□□□□ -0.47
SHMT2-220ENST00000555634 TRIM43Q96BQ3 446 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-220ENST00000555634 BORCS6Q96GS4 357 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 UROC1Q96N76 676 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 ERGIC2Q96RQ1 377 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 INTS13Q9NVM9 706 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 INPP5FQ9Y2H2 1132 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 BRCA2P51587 3418 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 KIAA1671Q9BY89 1806 aa12.09□□□□□ -0.47
SHMT2-220ENST00000555634 PTPRSQ13332 1948 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 ARHGEF37A1IGU5 675 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 ARL5CA6NH57 179 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 LACTBL1A8MY62 500 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 PMM2O15305 246 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 MGEA5O60502 916 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 NFICP08651 508 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 KCNE1P15382 129 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 GSDMDP57764 484 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 YWHAEP62258 255 aaKnown RBP12.08□□□□□ -0.48
SHMT2-220ENST00000555634 DLG4P78352 724 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 CLDN10P78369 228 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 SYCP1Q15431 976 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 SLC10A6Q3KNW5 377 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 TMC6Q7Z403 805 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 LRRC43Q8N309 656 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 SMG8Q8ND04 991 aaKnown RBP12.08□□□□□ -0.48
SHMT2-220ENST00000555634 ZSWIM2Q8NEG5 633 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 TAF4BQ92750 862 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 BADQ92934 168 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 NT5C1BQ96P26 610 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 LSM14BQ9BX40 385 aaKnown RBP12.08□□□□□ -0.48
SHMT2-220ENST00000555634 DPP3Q9NY33 737 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 KLK14Q9P0G3 267 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 IMPACTQ9P2X3 320 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 PDE4DIPQ5VU43 2346 aa12.08□□□□□ -0.48
SHMT2-220ENST00000555634 FGBP02675 491 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 ITGB3P05106 788 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 CYP3A5P20815 502 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 PAX3P23760 479 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 TBXAS1P24557 533 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-220ENST00000555634 ATICP31939 592 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 TNNC1P63316 161 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 RBP5P82980 135 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 NCOA4Q13772 614 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 NR1I3Q14994 352 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 ZNF699Q32M78 642 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 ZACNQ401N2 412 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 SV2CQ496J9 727 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 NOMO2Q5JPE7 1267 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 GLRA4Q5JXX5 417 aa12.07□□□□□ -0.48
SHMT2-220ENST00000555634 ENOSF1Q7L5Y1 443 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms