RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 ARFGEF1Q9Y6D6 1849 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 HNRNPDLO14979 420 aaKnown RBP10.14□□□□□ -0.79
SYNE2-213ENST00000554805 POTEJP0CG39 1038 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 RRM1P23921 792 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 CNGA1P29973 690 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 CETN2P41208 172 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 TKFCQ3LXA3 575 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 WDR44Q5JSH3 913 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 SPATA21Q7Z572 469 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 FAM228AQ86W67 206 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 KIRREL3Q8IZU9 778 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 OGFOD1Q8N543 542 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 FNBP1Q96RU3 617 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 FAM213AQ9BRX8 229 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 RANBP17Q9H2T7 1088 aaKnown RBP10.14□□□□□ -0.79
SYNE2-213ENST00000554805 RAVER2Q9HCJ3 691 aaKnown RBP10.14□□□□□ -0.79
SYNE2-213ENST00000554805 KLHL14Q9P2G3 628 aa10.14□□□□□ -0.79
SYNE2-213ENST00000554805 POC1B-GALNT4F8VUJ3 575 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 IGF2BP3O00425 579 aaKnown RBP eCLIP10.13□□□□□ -0.79
SYNE2-213ENST00000554805 TTC4O95801 387 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 GSCP56915 257 aaPredicted RBP10.13□□□□□ -0.79
SYNE2-213ENST00000554805 KCNJ2P63252 427 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 PRUNE1Q86TP1 453 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 IFT74Q96LB3 600 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 SERPINB12Q96P63 405 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 MRIQ9BWK5 157 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 ADAM33Q9BZ11 813 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 TMEM8AQ9HCN3 771 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 KLHL11Q9NVR0 708 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 WHRNQ9P202 907 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 TBX20Q9UMR3 447 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 L3MBTL1Q9Y468 752 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 SPAG7O75391 227 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 GSTA1P08263 222 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 RALAP11233 206 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 CD58P19256 250 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 PLCB3Q01970 1234 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 UGCGQ16739 394 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 LIN9Q5TKA1 542 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 IZUMO3Q5VZ72 239 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 SV2AQ7L0J3 742 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 ATL2Q8NHH9 583 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 PARD3BQ8TEW8 1205 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 STAMBPL1Q96FJ0 436 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 RSRC1Q96IZ7 334 aaKnown RBP10.13□□□□□ -0.79
SYNE2-213ENST00000554805 CEP170P1Q96L14 293 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 TMEM109Q9BVC6 243 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 ZNF341Q9BYN7 854 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 LRRC19Q9H756 370 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 FEM1BQ9UK73 627 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 AGAP1Q9UPQ3 857 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 CFAP73A6NFT4 308 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 FSCN2O14926 492 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 GH1P01241 217 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 ATF7P17544 494 aaPredicted RBP10.13□□□□□ -0.79
SYNE2-213ENST00000554805 BAG6P46379 1132 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 CD101Q93033 1021 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 COL20A1Q9P218 1284 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 MCM8Q9UJA3 840 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 R3HDM2Q9Y2K5 976 aaKnown RBP10.13□□□□□ -0.79
SYNE2-213ENST00000554805 USP20Q9Y2K6 914 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.13□□□□□ -0.79
SYNE2-213ENST00000554805 SMCHD1A6NHR9 2005 aa10.13□□□□□ -0.79
SYNE2-213ENST00000554805 C10orf71Q711Q0 1435 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 RASA4BC9J798 803 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 PI4K2BG5E9Z4 385 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 RASA4O43374 803 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 MGRN1O60291 552 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 HARSP12081 509 aaKnown RBP10.12□□□□□ -0.79
SYNE2-213ENST00000554805 NQO1P15559 274 aaKnown RBP10.12□□□□□ -0.79
SYNE2-213ENST00000554805 KRT15P19012 456 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 MAN1A1P33908 653 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 NPTX2P47972 431 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 GTF2BQ00403 316 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 CYP1B1Q16678 543 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 CLEC16AQ2KHT3 1053 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 ARHGEF18Q6ZSZ5 1173 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 VSIG1Q86XK7 387 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 HELQQ8TDG4 1101 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 TAAR1Q96RJ0 339 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 TRAIPQ9BWF2 469 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 STRA6Q9BX79 667 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 DCLK3Q9C098 648 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 TMEM39BQ9GZU3 492 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 VPS37BQ9H9H4 285 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 AGO4Q9HCK5 861 aaKnown RBP10.12□□□□□ -0.79
SYNE2-213ENST00000554805 SAYSD1Q9NPB0 183 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 NINJ2Q9NZG7 142 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 PNMA3Q9UL41 463 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 ARL2BPQ9Y2Y0 163 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 PSMC5P62195 406 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 LACTBP83111 547 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-213ENST00000554805 SIX1Q15475 284 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-213ENST00000554805 ACCSLQ4AC99 568 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 CDAN1Q8IWY9 1227 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 ZNF148Q9UQR1 794 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 PCDHB4Q9Y5E5 795 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 MTA2O94776 668 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 IFNB1P01574 187 aa10.12□□□□□ -0.79
SYNE2-213ENST00000554805 MAPTP10636 758 aaKnown RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms