RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 CDT1Q9H211 546 aa13.97□□□□□ -0.17
LINC00643-202ENST00000553426 LARSQ9P2J5 1176 aaKnown RBP13.97□□□□□ -0.17
LINC00643-202ENST00000553426 POLIQ9UNA4 740 aa13.97□□□□□ -0.17
LINC00643-202ENST00000553426 PLXNA3P51805 1871 aa13.97□□□□□ -0.17
LINC00643-202ENST00000553426 STK25O00506 426 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 SLC26A4O43511 780 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 N4BP1O75113 896 aaKnown RBP13.96□□□□□ -0.17
LINC00643-202ENST00000553426 BMP15O95972 392 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 HARSP12081 509 aaKnown RBP13.96□□□□□ -0.17
LINC00643-202ENST00000553426 LAMP2P13473 410 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 PLS3P13797 630 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 FGFR3P22607 806 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 FSHRP23945 695 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 HOXA9P31269 272 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 OR1D2P34982 312 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 UBA7P41226 1012 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 MATR3P43243 847 aaKnown RBP eCLIP13.96□□□□□ -0.17
LINC00643-202ENST00000553426 RAB33AQ14088 237 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 HYIQ5T013 277 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 DAW1Q8N136 415 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 SIX5Q8N196 739 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 SYT2Q8N9I0 419 aaPredicted RBP13.96□□□□□ -0.17
LINC00643-202ENST00000553426 RASSF8Q8NHQ8 419 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 CALML4Q96GE6 196 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 MYADMQ96S97 322 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 RTP3Q9BQQ7 232 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 CXCL16Q9H2A7 254 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 PTPRHQ9HD43 1115 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 WNT16Q9UBV4 365 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 NUB1Q9Y5A7 615 aa13.96□□□□□ -0.17
LINC00643-202ENST00000553426 C2orf16Q68DN1 1984 aa13.96□□□□□ -0.18
LINC00643-202ENST00000553426 H0Y858 1186 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 CLDN3O15551 220 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 TOM1L1O75674 476 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 PLA2G4BP0C869 781 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 SRFP11831 508 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 KCNE1P15382 129 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 RPL9P32969 192 aaKnown RBP13.95□□□□□ -0.18
LINC00643-202ENST00000553426 MAPK7Q13164 816 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 NOLC1Q14978 699 aaKnown RBP eCLIP13.95□□□□□ -0.18
LINC00643-202ENST00000553426 XKR4Q5GH76 650 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 AXDND1Q5T1B0 1012 aaPredicted RBP13.95□□□□□ -0.18
LINC00643-202ENST00000553426 ALKAL1Q6UXT8 129 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 KCNK18Q7Z418 384 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 GRASPQ7Z6J2 395 aaPredicted RBP13.95□□□□□ -0.18
LINC00643-202ENST00000553426 SLC44A3Q8N4M1 653 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 TMEM105Q8N8V8 129 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 CEP120Q8N960 986 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 SLC7A14Q8TBB6 771 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 BICD1Q96G01 975 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 PLIN2Q99541 437 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 GOLGA2P5Q9HBQ8 144 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 FAM86C1Q9NVL1 165 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 ANKFY1Q9P2R3 1169 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 MTRRQ9UBK8 725 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 BACE2Q9Y5Z0 518 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 CDY1Q9Y6F8 540 aa13.95□□□□□ -0.18
LINC00643-202ENST00000553426 MTCL1Q9Y4B5 1905 aaKnown RBP13.94□□□□□ -0.18
LINC00643-202ENST00000553426 H7C4K7 107 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 PODXLO00592 558 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 CCL16O15467 120 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 CFHP08603 1231 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 AOC1P19801 751 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 SCP2P22307 547 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 PROZP22891 400 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 TKTP29401 623 aaKnown RBP13.94□□□□□ -0.18
LINC00643-202ENST00000553426 ELF1P32519 619 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 ZPBP2Q6X784 338 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 TAS1R3Q7RTX0 852 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 BRAPQ7Z569 592 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 TMEM161BQ8NDZ6 487 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 RSAD2Q8WXG1 361 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 PNMA5Q96PV4 448 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 CNTN3Q9P232 1028 aa13.94□□□□□ -0.18
LINC00643-202ENST00000553426 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.94□□□□□ -0.18
LINC00643-202ENST00000553426 I3L4J1 428 aa13.93□□□□□ -0.18
LINC00643-202ENST00000553426 SYN3O14994 580 aa13.93□□□□□ -0.18
LINC00643-202ENST00000553426 ADAM12O43184 909 aa13.93□□□□□ -0.18
LINC00643-202ENST00000553426 NARSO43776 548 aaKnown RBP13.93□□□□□ -0.18
LINC00643-202ENST00000553426 KRT18P05783 430 aaKnown RBP13.93□□□□□ -0.18
LINC00643-202ENST00000553426 POU2F2P09086 479 aa13.93□□□□□ -0.18
LINC00643-202ENST00000553426 MAPTP10636 758 aaKnown RBP13.93□□□□□ -0.18
LINC00643-202ENST00000553426 BRCC3P46736 316 aa13.93□□□□□ -0.18
LINC00643-202ENST00000553426 SLC12A3P55017 1021 aa13.93□□□□□ -0.18
LINC00643-202ENST00000553426 KYAT1Q16773 422 aa13.93□□□□□ -0.18
LINC00643-202ENST00000553426 MTSS1LQ765P7 747 aa13.93□□□□□ -0.18
LINC00643-202ENST00000553426 CDH7Q9ULB5 785 aa13.93□□□□□ -0.18
LINC00643-202ENST00000553426 ODF2LQ9ULJ1 636 aa13.93□□□□□ -0.18
LINC00643-202ENST00000553426 ANHXE9PGG2 379 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 PRRG1O14668 218 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 FAM13AO94988 1023 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 CD2BP2O95400 341 aaKnown RBP13.92□□□□□ -0.18
LINC00643-202ENST00000553426 LRG1P02750 347 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 PDCP20941 246 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 MARCKSP29966 332 aaPredicted RBP13.92□□□□□ -0.18
LINC00643-202ENST00000553426 ABCD1P33897 745 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 MCM4P33991 863 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 LIG4P49917 911 aa13.92□□□□□ -0.18
LINC00643-202ENST00000553426 SOX4Q06945 474 aaPredicted RBP13.92□□□□□ -0.18
LINC00643-202ENST00000553426 HTR4Q13639 388 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms