RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 SPIRE2Q8WWL2 714 aa14.63□□□□□ -0.07
CPSF6-204ENST00000547486 C18orf25Q96B23 403 aaPredicted RBP14.63□□□□□ -0.07
CPSF6-204ENST00000547486 ACAP3Q96P50 834 aa14.63□□□□□ -0.07
CPSF6-204ENST00000547486 PRRX2Q99811 253 aa14.63□□□□□ -0.07
CPSF6-204ENST00000547486 TIPINQ9BVW5 301 aa14.63□□□□□ -0.07
CPSF6-204ENST00000547486 UPF2Q9HAU5 1272 aaKnown RBP14.63□□□□□ -0.07
CPSF6-204ENST00000547486 IGSF9Q9P2J2 1179 aa14.63□□□□□ -0.07
CPSF6-204ENST00000547486 DAXXQ9UER7 740 aaPredicted RBP14.63□□□□□ -0.07
CPSF6-204ENST00000547486 ZDBF2Q9HCK1 2354 aa14.63□□□□□ -0.07
CPSF6-204ENST00000547486 C2orf16Q68DN1 1984 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 KCNE1P15382 129 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 TKTP29401 623 aaKnown RBP14.62□□□□□ -0.07
CPSF6-204ENST00000547486 RAB33AQ14088 237 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 SLC10A6Q3KNW5 377 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 DENND4AQ7Z401 1863 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 GRASPQ7Z6J2 395 aaPredicted RBP14.62□□□□□ -0.07
CPSF6-204ENST00000547486 TMEM130Q8N3G9 435 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 KCTD17Q8N5Z5 321 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 STAMQ92783 540 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 SNX27Q96L92 541 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 UROC1Q96N76 676 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 HAPLN2Q9GZV7 340 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 FAM86C1Q9NVL1 165 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 MTRRQ9UBK8 725 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 DUSP12Q9UNI6 340 aa14.62□□□□□ -0.07
CPSF6-204ENST00000547486 H0Y858 1186 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 CCL16O15467 120 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 PI15O43692 258 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 TOM1L1O75674 476 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 C8AP07357 584 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 HARSP12081 509 aaKnown RBP14.61□□□□□ -0.07
CPSF6-204ENST00000547486 LAMP2P13473 410 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 STRN3Q13033 797 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 AXDND1Q5T1B0 1012 aaPredicted RBP14.61□□□□□ -0.07
CPSF6-204ENST00000547486 CWF19L1Q69YN2 538 aaKnown RBP14.61□□□□□ -0.07
CPSF6-204ENST00000547486 ASTLQ6HA08 431 aaPredicted RBP14.61□□□□□ -0.07
CPSF6-204ENST00000547486 GET4Q7L5D6 327 aaPredicted RBP14.61□□□□□ -0.07
CPSF6-204ENST00000547486 DDX27Q96GQ7 796 aaKnown RBP14.61□□□□□ -0.07
CPSF6-204ENST00000547486 CDK5RAP3Q96JB5 506 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 TOPORSQ9NS56 1045 aaPredicted RBP14.61□□□□□ -0.07
CPSF6-204ENST00000547486 BLOC1S4Q9NUP1 217 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.61□□□□□ -0.07
CPSF6-204ENST00000547486 CNTN3Q9P232 1028 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.61□□□□□ -0.07
CPSF6-204ENST00000547486 CDY1Q9Y6F8 540 aa14.61□□□□□ -0.07
CPSF6-204ENST00000547486 ANHXE9PGG2 379 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 PODXLO00592 558 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 GALR2O43603 387 aaPredicted RBP14.6□□□□□ -0.07
CPSF6-204ENST00000547486 CFHP08603 1231 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 HNRNPA1P09651 372 aaKnown RBP eCLIP14.6□□□□□ -0.07
CPSF6-204ENST00000547486 FSHRP23945 695 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 CLCN5P51795 746 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 SMTNP53814 917 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 CUL4AQ13619 759 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 DHX8Q14562 1220 aaKnown RBP14.6□□□□□ -0.07
CPSF6-204ENST00000547486 PPM1LQ5SGD2 360 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 PDXDC1Q6P996 788 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 SIX5Q8N196 739 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 FLCNQ8NFG4 579 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 SLC7A14Q8TBB6 771 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 AK8Q96MA6 479 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 RPP25Q9BUL9 199 aaKnown RBP14.6□□□□□ -0.07
CPSF6-204ENST00000547486 MFSD1Q9H3U5 465 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 HCFC1R1Q9NWW0 138 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 KCND2Q9NZV8 630 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 ANKFY1Q9P2R3 1169 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 KCNG1Q9UIX4 513 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 BACE2Q9Y5Z0 518 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 KMT2EQ8IZD2 1858 aa14.6□□□□□ -0.07
CPSF6-204ENST00000547486 KRBA1A5PL33 1030 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 TRAPPC3O43617 180 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 TBC1D4O60343 1298 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 UBA7P41226 1012 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 NUBP1P53384 320 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 NCKAP1LP55160 1127 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 MCL1Q07820 350 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 HTR4Q13639 388 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 MCM6Q14566 821 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 NOLC1Q14978 699 aaKnown RBP eCLIP14.59□□□□□ -0.07
CPSF6-204ENST00000547486 SF3A1Q15459 793 aaKnown RBP14.59□□□□□ -0.07
CPSF6-204ENST00000547486 LIN9Q5TKA1 542 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 ZPBP2Q6X784 338 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 ANKS3Q6ZW76 656 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 HAUS6Q7Z4H7 955 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 NXPE3Q969Y0 559 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 REEP2Q9BRK0 252 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 SLC38A7Q9NVC3 462 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 DNMT3BQ9UBC3 853 aaKnown RBP14.59□□□□□ -0.07
CPSF6-204ENST00000547486 FBXL21Q9UKT6 434 aa14.59□□□□□ -0.07
CPSF6-204ENST00000547486 PIEZO1Q92508 2521 aa14.58□□□□□ -0.07
CPSF6-204ENST00000547486 CLDN3O15551 220 aa14.58□□□□□ -0.08
CPSF6-204ENST00000547486 SLC26A4O43511 780 aa14.58□□□□□ -0.08
CPSF6-204ENST00000547486 HOXA9P31269 272 aa14.58□□□□□ -0.08
CPSF6-204ENST00000547486 RPL9P32969 192 aaKnown RBP14.58□□□□□ -0.08
CPSF6-204ENST00000547486 TNFSF9P41273 254 aa14.58□□□□□ -0.08
CPSF6-204ENST00000547486 SPAG1Q07617 926 aa14.58□□□□□ -0.08
CPSF6-204ENST00000547486 MRPL58Q14197 206 aaKnown RBP14.58□□□□□ -0.08
CPSF6-204ENST00000547486 KARSQ15046 597 aaKnown RBP14.58□□□□□ -0.08
CPSF6-204ENST00000547486 UVSSAQ2YD98 709 aa14.58□□□□□ -0.08
CPSF6-204ENST00000547486 VARS2Q5ST30 1063 aaKnown RBP14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms