RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 ATRNL1Q5VV63 1379 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 RBP3P10745 1247 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 TMED10P49755 219 aaKnown RBP11.82□□□□□ -0.52
CDH3-203ENST00000542274 NT5C2P49902 561 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 B2MP61769 119 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 RBL2Q08999 1139 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 MKRN3Q13064 507 aaKnown RBP11.82□□□□□ -0.52
CDH3-203ENST00000542274 PAK1Q13153 545 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 TUBA3CQ13748 450 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 NR1D2Q14995 579 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 ZNF658Q5TYW1 1059 aaPredicted RBP11.82□□□□□ -0.52
CDH3-203ENST00000542274 TATDN1Q6P1N9 297 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 SLAIN1Q8ND83 568 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 FAM20AQ96MK3 541 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 TUBGCP5Q96RT8 1024 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 HAPLN3Q96S86 360 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 P2RX7Q99572 595 aaKnown RBP11.82□□□□□ -0.52
CDH3-203ENST00000542274 FAM192AQ9GZU8 254 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 GIT1Q9Y2X7 761 aa11.82□□□□□ -0.52
CDH3-203ENST00000542274 SOWAHDA6NJG2 315 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 CCDC169A6NNP5 214 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 ATP5DP30049 168 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 DSTNP60981 165 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 GUCY1A3Q02108 690 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 GUCY2DQ02846 1103 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 MRPL28Q13084 256 aaKnown RBP11.81□□□□□ -0.52
CDH3-203ENST00000542274 ECM1Q16610 540 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 LVRNQ6Q4G3 990 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 CCDC81Q6ZN84 652 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 KCNK18Q7Z418 384 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 TREML1Q86YW5 311 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 EHBP1Q8NDI1 1231 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 FAM151AQ8WW52 585 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 GBP5Q96PP8 586 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 KBTBD4Q9NVX7 518 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 SCOCQ9UIL1 159 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 INTUQ9ULD6 942 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 CCDC162PA2VCL2 907 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 NPM3O75607 178 aaKnown RBP11.81□□□□□ -0.52
CDH3-203ENST00000542274 UBXN2AP68543 259 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 STK4Q13043 487 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 HLTFQ14527 1009 aaKnown RBP eCLIP11.81□□□□□ -0.52
CDH3-203ENST00000542274 ZNF268Q14587 947 aaPredicted RBP11.81□□□□□ -0.52
CDH3-203ENST00000542274 CYTH1Q15438 398 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 CALCRLQ16602 461 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 QRICH1Q2TAL8 776 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 PDCD4Q53EL6 469 aaKnown RBP11.81□□□□□ -0.52
CDH3-203ENST00000542274 SIGIRRQ6IA17 410 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 IRF2BP1Q8IU81 584 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 LSMEM2Q8N112 164 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 PPP1R14CQ8TAE6 165 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 CCDC17Q96LX7 622 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 CCSER2Q9H7U1 834 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 SFMBT1Q9UHJ3 866 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 ATPIF1Q9UII2 106 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 DSEQ9UL01 958 aa11.81□□□□□ -0.52
CDH3-203ENST00000542274 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 PNMA6FA0A0J9YX94 578 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 C19orf81C9J6K1 198 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 PPP1R37O75864 691 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 ATP6V1C1P21283 382 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 SLC1A4P43007 532 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 FXR1P51114 621 aaKnown RBP eCLIP11.8□□□□□ -0.52
CDH3-203ENST00000542274 AP3M2P53677 418 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 PDE4DQ08499 809 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 TRIM71Q2Q1W2 868 aaKnown RBP11.8□□□□□ -0.52
CDH3-203ENST00000542274 DYMQ7RTS9 669 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 TBC1D1Q86TI0 1168 aaPredicted RBP11.8□□□□□ -0.52
CDH3-203ENST00000542274 GIMAP5Q96F15 307 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 ZBED3Q96IU2 234 aaPredicted RBP11.8□□□□□ -0.52
CDH3-203ENST00000542274 MTMR9Q96QG7 549 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 POLD4Q9HCU8 107 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 HMGXB4Q9UGU5 601 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 CNOT7Q9UIV1 285 aaKnown RBP11.8□□□□□ -0.52
CDH3-203ENST00000542274 COMMD3-BMI1R4GMX3 469 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 A0A1W2PRG0 241 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 KANSL1LA0AUZ9 987 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 C2orf81A6NN90 581 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 E7EVH7 732 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 KATNA1O75449 491 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 CASP14P31944 242 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 GRB10Q13322 594 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 SLFN13Q68D06 897 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 RFPL4BQ6ZWI9 263 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 CCNJLQ8IV13 435 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 GLIS3Q8NEA6 775 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 OSCP1Q8WVF1 389 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 PNMA5Q96PV4 448 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 FAM129AQ9BZQ8 928 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 TRIM9Q9C026 710 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 CCDC177Q9NQR7 707 aaPredicted RBP11.8□□□□□ -0.52
CDH3-203ENST00000542274 ZBTB21Q9ULJ3 1066 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 PPP2R2CQ9Y2T4 447 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 LRRC42Q9Y546 428 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 SMCHD1A6NHR9 2005 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 FZD9O00144 591 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 ZBTB5O15062 677 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 GYPCP04921 128 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 GHRP10912 638 aa11.8□□□□□ -0.52
CDH3-203ENST00000542274 PBX1P40424 430 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms