RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 COL4A2P08572 1712 aa13.08□□□□□ -0.32
COPA-205ENST00000541366 ZFYVE26Q68DK2 2539 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 I3L4J1 428 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 SLITRK3O94933 977 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 POU2F2P09086 479 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 TKTP29401 623 aaKnown RBP13.07□□□□□ -0.32
COPA-205ENST00000541366 NRLP54845 237 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 POU5F1BQ06416 359 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 SSRP1Q08945 709 aaKnown RBP13.07□□□□□ -0.32
COPA-205ENST00000541366 SPIRE1Q08AE8 756 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 TFDP1Q14186 410 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 CSRP2Q16527 193 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 N4BP2L1Q5TBK1 243 aaPredicted RBP13.07□□□□□ -0.32
COPA-205ENST00000541366 HEATR6Q6AI08 1181 aaKnown RBP13.07□□□□□ -0.32
COPA-205ENST00000541366 BLOC1S2Q6QNY1 142 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 DNASE1L2Q92874 299 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 FAM20AQ96MK3 541 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 ZSWIM3Q96MP5 696 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 AGXT2Q9BYV1 514 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 ZSWIM4Q9H7M6 989 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 GPRC5CQ9NQ84 441 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 RBM12Q9NTZ6 932 aaKnown RBP13.07□□□□□ -0.32
COPA-205ENST00000541366 C2orf42Q9NWW7 574 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 MTRRQ9UBK8 725 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 SNX14Q9Y5W7 946 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 SPEGQ15772 3267 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 NCANO14594 1321 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 LAMA1P25391 3075 aa13.07□□□□□ -0.32
COPA-205ENST00000541366 MAN2B1O00754 1011 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 LRP3O75074 770 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 RECQL4O94761 1208 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 THP07101 528 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 HOXB3P14651 431 aaPredicted RBP13.06□□□□□ -0.32
COPA-205ENST00000541366 FGFR3P22607 806 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 RPS6KB1P23443 525 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 GDI1P31150 447 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 CCR2P41597 374 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 CCDC6Q16204 474 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 CD300LGQ6UXG3 332 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 VITQ6UXI7 678 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.06□□□□□ -0.32
COPA-205ENST00000541366 MAMSTRQ6ZN01 415 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 MAEAQ7L5Y9 396 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 NOSTRINQ8IVI9 506 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 DAGLBQ8NCG7 672 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 FAM3CQ92520 227 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 CORO1BQ9BR76 489 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 LARP6Q9BRS8 491 aaKnown RBP13.06□□□□□ -0.32
COPA-205ENST00000541366 TRMT61BQ9BVS5 477 aaKnown RBP13.06□□□□□ -0.32
COPA-205ENST00000541366 POLR3FQ9H1D9 316 aaPredicted RBP13.06□□□□□ -0.32
COPA-205ENST00000541366 ZNF334Q9HCZ1 680 aaPredicted RBP13.06□□□□□ -0.32
COPA-205ENST00000541366 RXFP3Q9NSD7 469 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 GJB4Q9NTQ9 266 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 ANGPTL2Q9UKU9 493 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 PIAS3Q9Y6X2 628 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 TRIP11Q15643 1979 aa13.06□□□□□ -0.32
COPA-205ENST00000541366 LRRIQ4A6NIV6 560 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 TBX3O15119 743 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 MARCH6O60337 910 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 CCNT1O60563 726 aaKnown RBP13.05□□□□□ -0.32
COPA-205ENST00000541366 EDN1P05305 212 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 CHRNB1P11230 501 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 PTPN2P17706 415 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 CCNE1P24864 410 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 PMLP29590 882 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 VIPR2P41587 438 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 BRCC3P46736 316 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 CXCL12P48061 93 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 CCR3P51677 355 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 ELAVL2Q12926 359 aaKnown RBP13.05□□□□□ -0.32
COPA-205ENST00000541366 COL9A2Q14055 689 aaPredicted RBP13.05□□□□□ -0.32
COPA-205ENST00000541366 SF3A2Q15428 464 aaKnown RBP13.05□□□□□ -0.32
COPA-205ENST00000541366 EARS2Q5JPH6 523 aaKnown RBP13.05□□□□□ -0.32
COPA-205ENST00000541366 WDR44Q5JSH3 913 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 GLRA4Q5JXX5 417 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 PRSS36Q5K4E3 855 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 KRT25Q7Z3Z0 450 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.05□□□□□ -0.32
COPA-205ENST00000541366 MAP4K3Q8IVH8 894 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 HS6ST3Q8IZP7 471 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 C3orf58Q8NDZ4 430 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 OXER1Q8TDS5 423 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 PIGOQ8TEQ8 1089 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 KCNB2Q92953 911 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 DDX27Q96GQ7 796 aaKnown RBP13.05□□□□□ -0.32
COPA-205ENST00000541366 ASB16Q96NS5 453 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 EIF2AK1Q9BQI3 630 aaKnown RBP13.05□□□□□ -0.32
COPA-205ENST00000541366 NFKBIZQ9BYH8 718 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 PDZD7Q9H5P4 517 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 GOLGA2P5Q9HBQ8 144 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 ZFP14Q9HCL3 533 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 GDAQ9Y2T3 454 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 ZMYM2Q9UBW7 1377 aa13.05□□□□□ -0.32
COPA-205ENST00000541366 WDR27A2RRH5 827 aa13.04□□□□□ -0.32
COPA-205ENST00000541366 FAM205CA6NFA0 338 aa13.04□□□□□ -0.32
COPA-205ENST00000541366 USO1O60763 962 aaKnown RBP13.04□□□□□ -0.32
COPA-205ENST00000541366 B3GAT3O94766 335 aa13.04□□□□□ -0.32
COPA-205ENST00000541366 SEC24AO95486 1093 aa13.04□□□□□ -0.32
COPA-205ENST00000541366 LRG1P02750 347 aa13.04□□□□□ -0.32
COPA-205ENST00000541366 GJA1P17302 382 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms