RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 ZSCAN20P17040 1043 aaPredicted RBP11.44□□□□□ -0.58
VPS33A-204ENST00000540669 VAMP7P51809 220 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 AFF1P51825 1210 aaKnown RBP11.44□□□□□ -0.58
VPS33A-204ENST00000540669 DSC1Q08554 894 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 SURF1Q15526 300 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 CBWD6Q4V339 395 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 EPC2Q52LR7 807 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 CBWD3Q5JTY5 395 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 CBWD5Q5RIA9 395 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 TDHQ8IZJ6 230 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 OR5B17Q8NGF7 314 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 LMO3Q8TAP4 145 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 HERVK_113Q902F9 699 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 ZNF689Q96CS4 500 aaPredicted RBP11.44□□□□□ -0.58
VPS33A-204ENST00000540669 ACAP3Q96P50 834 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 ERGIC2Q96RQ1 377 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 GDF15Q99988 308 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.44□□□□□ -0.58
VPS33A-204ENST00000540669 TCHPQ9BT92 498 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 PRO3102Q9H379 93 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 TOPORSQ9NS56 1045 aaPredicted RBP11.44□□□□□ -0.58
VPS33A-204ENST00000540669 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.44□□□□□ -0.58
VPS33A-204ENST00000540669 NLRC5Q86WI3 1866 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 ANO9A1A5B4 782 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 ARL5CA6NH57 179 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 GOLGA6L19H0YKK7 550 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 OFD1O75665 1012 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 VNN1O95497 513 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 STAU1O95793 577 aaKnown RBP11.43□□□□□ -0.58
VPS33A-204ENST00000540669 C4BPAP04003 597 aaKnown RBP11.43□□□□□ -0.58
VPS33A-204ENST00000540669 CYP3A5P20815 502 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 LRPAP1P30533 357 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 FMO5P49326 533 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 AP3M2P53677 418 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 DEFB103AP81534 67 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 HTRA4P83105 476 aaPredicted RBP11.43□□□□□ -0.58
VPS33A-204ENST00000540669 FANCCQ00597 558 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 IKBKEQ14164 716 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 NR1I3Q14994 352 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 CCDC40Q4G0X9 1142 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 VWA3BQ502W6 1294 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 HSP90AA4PQ58FG1 418 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 TDRD10Q5VZ19 366 aaKnown RBP11.43□□□□□ -0.58
VPS33A-204ENST00000540669 SMYD5Q6GMV2 418 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.43□□□□□ -0.58
VPS33A-204ENST00000540669 DEFB128Q7Z7B8 93 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 C1orf127Q8N9H9 656 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 LPPQ93052 612 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 TOP1MTQ969P6 601 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 FAM84AQ96KN4 292 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 ZFP42Q96MM3 310 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 NAP1L5Q96NT1 182 aaPredicted RBP11.43□□□□□ -0.58
VPS33A-204ENST00000540669 TRIM6Q9C030 488 aaPredicted RBP11.43□□□□□ -0.58
VPS33A-204ENST00000540669 TTYH3Q9C0H2 523 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 TMEM117Q9H0C3 514 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 NDST4Q9H3R1 872 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 VRTNQ9H8Y1 702 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 RPF1Q9H9Y2 349 aaKnown RBP11.43□□□□□ -0.58
VPS33A-204ENST00000540669 RSAD1Q9HA92 442 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 TMEM8AQ9HCN3 771 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 UBN1Q9NPG3 1134 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 TAB2Q9NYJ8 693 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 SIX4Q9UIU6 781 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 SIK3Q9Y2K2 1263 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 VWA8A3KMH1 1905 aa11.43□□□□□ -0.58
VPS33A-204ENST00000540669 SMIM28A0A1B0GU29 152 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 A0A1W2PQC6 194 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 DGKIO75912 1065 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 EFEMP2O95967 443 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 AFPP02771 609 aaKnown RBP11.42□□□□□ -0.58
VPS33A-204ENST00000540669 ITGA4P13612 1032 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 AKAP5P24588 427 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 MLH1P40692 756 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 AARSP49588 968 aaKnown RBP eCLIP11.42□□□□□ -0.58
VPS33A-204ENST00000540669 MXI1P50539 228 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 SOX4Q06945 474 aaPredicted RBP11.42□□□□□ -0.58
VPS33A-204ENST00000540669 KCNH2Q12809 1159 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 GRIK3Q13003 919 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 TPD52L1Q16890 204 aaPredicted RBP11.42□□□□□ -0.58
VPS33A-204ENST00000540669 TMEM132AQ24JP5 1023 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 SCARA3Q6AZY7 606 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 JADE1Q6IE81 842 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 SV2AQ7L0J3 742 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 LIMS2Q7Z4I7 341 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 HACE1Q8IYU2 909 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 PGBD4Q96DM1 585 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 MRFAP1L1Q96HT8 127 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 XYLT2Q9H1B5 865 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 GRPEL1Q9HAV7 217 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 SIX2Q9NPC8 291 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 MIOSQ9NXC5 875 aa11.42□□□□□ -0.58
VPS33A-204ENST00000540669 CXXC1Q9P0U4 656 aaPredicted RBP11.42□□□□□ -0.58
VPS33A-204ENST00000540669 COLQQ9Y215 455 aaPredicted RBP11.42□□□□□ -0.58
VPS33A-204ENST00000540669 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.42□□□□□ -0.58
VPS33A-204ENST00000540669 ITIH6Q6UXX5 1313 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 ATG2AQ2TAZ0 1938 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 HOXA2O43364 376 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 N4BP1O75113 896 aaKnown RBP11.41□□□□□ -0.58
VPS33A-204ENST00000540669 ACRP10323 421 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 KRT13P13646 458 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms