RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 KANSL3Q9P2N6 904 aa5.55□□□□□ -1.52
USH1C-210ENST00000534556 TUBGCP4Q9UGJ1 667 aa5.55□□□□□ -1.52
USH1C-210ENST00000534556 ADAM28Q9UKQ2 775 aa5.55□□□□□ -1.52
USH1C-210ENST00000534556 ODF2LQ9ULJ1 636 aa5.55□□□□□ -1.52
USH1C-210ENST00000534556 TBX20Q9UMR3 447 aa5.55□□□□□ -1.52
USH1C-210ENST00000534556 RBM19Q9Y4C8 960 aaKnown RBP5.55□□□□□ -1.52
USH1C-210ENST00000534556 MYO16Q9Y6X6 1858 aa5.55□□□□□ -1.52
USH1C-210ENST00000534556 LAMA1P25391 3075 aa5.55□□□□□ -1.52
USH1C-210ENST00000534556 DMXL1Q9Y485 3027 aa5.55□□□□□ -1.52
USH1C-210ENST00000534556 PATJQ8NI35 1801 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 A0A0B4J269 797 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 FAM86C2PA6NEL3 165 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 LOC730098B7Z3J9 87 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 K7ENM7 598 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 POLR2DO15514 142 aaKnown RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 ACTN4O43707 911 aaKnown RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 KLRC4O43908 158 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 TBC1D4O60343 1298 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 CUTAO60888 179 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 N4BP1O75113 896 aaKnown RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 TOM1L1O75674 476 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 RFPL2O75678 378 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 PRPF6O94906 941 aaKnown RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 FAM13AO94988 1023 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 VNN2O95498 520 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 MCF2P10911 925 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 FGFR3P22607 806 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 SP100P23497 879 aaPredicted RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 TKTP29401 623 aaKnown RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 EHHADHQ08426 723 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 CBX2Q14781 532 aaPredicted RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 NOLC1Q14978 699 aaKnown RBP eCLIP5.54□□□□□ -1.52
USH1C-210ENST00000534556 TMEM132AQ24JP5 1023 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 AAK1Q2M2I8 961 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 RARS2Q5T160 578 aaKnown RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 RRAGBQ5VZM2 374 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 RESP18Q5W5W9 173 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 TMC5Q6UXY8 1006 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 ZPBP2Q6X784 338 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 EPM2AIP1Q7L775 607 aaPredicted RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 PALB2Q86YC2 1186 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 MAP4K3Q8IVH8 894 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 ADHFE1Q8IWW8 467 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 EFCAB13Q8IY85 973 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 LEO1Q8WVC0 666 aaPredicted RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 ZNF707Q96C28 371 aaPredicted RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 FAM193BQ96PV7 902 aaPredicted RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 CLSTN3Q9BQT9 956 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 ADPGKQ9BRR6 497 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 GZF1Q9H116 711 aaPredicted RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 GOLPH3LQ9H4A5 285 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 ST6GALNAC4Q9H4F1 302 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 PARVGQ9HBI0 331 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 GDPD2Q9HCC8 539 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 UBN1Q9NPG3 1134 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 KCND2Q9NZV8 630 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 CNTN3Q9P232 1028 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 ANKFY1Q9P2R3 1169 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 STK17AQ9UEE5 414 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 PUF60Q9UHX1 559 aaKnown RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 CPSF3Q9UKF6 684 aaKnown RBP5.54□□□□□ -1.52
USH1C-210ENST00000534556 STYXL1Q9Y6J8 313 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 CFAP54Q96N23 3096 aa5.54□□□□□ -1.52
USH1C-210ENST00000534556 FANCMQ8IYD8 2048 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 PTPRJQ12913 1337 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.53□□□□□ -1.52
USH1C-210ENST00000534556 A0A1B0GVL5 298 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 TMEM189-UBE2V1I3L0A0 370 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 SPTLC1O15269 473 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 OGTO15294 1046 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 CLDN3O15551 220 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 TGFB1I1O43294 461 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 TGM5O43548 720 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 NCK2O43639 380 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 PAPLNO95428 1278 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 NFICP08651 508 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 PRR29P0C7W0 189 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 CA8P35219 290 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 STAT6P42226 847 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 GLUD2P49448 558 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 ACOT2P49753 483 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 CDR1P51861 262 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 NTHL1P78549 312 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 NCBP1Q09161 790 aaKnown RBP5.53□□□□□ -1.52
USH1C-210ENST00000534556 CUL4BQ13620 913 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 MRPL58Q14197 206 aaKnown RBP5.53□□□□□ -1.52
USH1C-210ENST00000534556 FAM171A1Q5VUB5 890 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 JADE1Q6IE81 842 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 SV2BQ7L1I2 683 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 RNF135Q8IUD6 432 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 GJD3Q8N144 294 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 ST13P5Q8NFI4 369 aaPredicted RBP5.53□□□□□ -1.52
USH1C-210ENST00000534556 CXorf38Q8TB03 319 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 RIN2Q8WYP3 895 aaPredicted RBP5.53□□□□□ -1.52
USH1C-210ENST00000534556 PIK3R5Q8WYR1 880 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 RSPH1Q8WYR4 309 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 DHX58Q96C10 678 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 DDX27Q96GQ7 796 aaKnown RBP5.53□□□□□ -1.52
USH1C-210ENST00000534556 BORCS6Q96GS4 357 aa5.53□□□□□ -1.52
USH1C-210ENST00000534556 FBXL18Q96ME1 805 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms