RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	MRGPRE	Q86SM8	312 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	ULK2	Q8IYT8	1036 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	ANKRD13A	Q8IZ07	590 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	MIER2	Q8N344	545 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	CPEB3	Q8NE35	698 aa	Known RBP	3.69	□□□□□ -1.82
CD44-238	ENST00000534296	STON2	Q8WXE9	905 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	JADE3	Q92613	823 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	TMX3	Q96JJ7	454 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	CEP89	Q96ST8	783 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	SMAD5	Q99717	465 aa	Known RBP	3.69	□□□□□ -1.82
CD44-238	ENST00000534296	C11orf54	Q9H0W9	315 aa	Predicted RBP	3.69	□□□□□ -1.82
CD44-238	ENST00000534296	SLITRK6	Q9H5Y7	841 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	GPRC5B	Q9NZH0	403 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	FAM30A	Q9NZY2	134 aa		3.69	□□□□□ -1.82
CD44-238	ENST00000534296	ING1	Q9UK53	422 aa	Predicted RBP	3.69	□□□□□ -1.82
CD44-238	ENST00000534296	RUVBL1	Q9Y265	456 aa	Known RBP	3.69	□□□□□ -1.82
CD44-238	ENST00000534296	AHRR	A9YTQ3	701 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	KIAA0391	O15091	583 aa	Known RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	ERN1	O75460	977 aa	Known RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	CDKL5	O76039	1030 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	SNUPN	O95149	360 aa	Known RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	FOS	P01100	380 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	MTHFD1	P11586	935 aa	Known RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	IGBP1	P78318	339 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	KIF23	Q02241	960 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	MTM1	Q13496	603 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	RAB39A	Q14964	217 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	UBXN2B	Q14CS0	331 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	SEPT2	Q15019	361 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	ERCC6L	Q2NKX8	1250 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	BEAN1	Q3B7T3	259 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	INAVA	Q3KP66	663 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	UAP1L1	Q3KQV9	507 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	PDCD4	Q53EL6	469 aa	Known RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	FAM102A	Q5T9C2	384 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	AGAP9	Q5VTM2	703 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	TSHZ3	Q63HK5	1081 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	IGFL4	Q6B9Z1	124 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	LAIR1	Q6GTX8	287 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	RHOU	Q7L0Q8	258 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	FAM43A	Q8N2R8	423 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	CBARP	Q8N350	705 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	FITM2	Q8N6M3	262 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	OR56A1	Q8NGH5	318 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	LARP4B	Q92615	738 aa	Known RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	DPF2	Q92785	391 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	CHFR	Q96EP1	664 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	TEKT5	Q96M29	485 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	TTPAL	Q9BTX7	342 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	PACSIN1	Q9BY11	444 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	SLC13A1	Q9BZW2	595 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	TES	Q9UGI8	421 aa	Known RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	NOP58	Q9Y2X3	529 aa	Known RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	MTO1	Q9Y2Z2	717 aa	Known RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	ACTL7A	Q9Y615	435 aa		3.68	□□□□□ -1.82
CD44-238	ENST00000534296	CFAP20	Q9Y6A4	193 aa	Known RBP	3.68	□□□□□ -1.82
CD44-238	ENST00000534296	ATRNL1	Q5VV63	1379 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	TMEM200C	A6NKL6	621 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	GABRD	O14764	452 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	PPFIA2	O75334	1257 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	HAUS5	O94927	633 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	GPANK1	O95872	356 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	VCAM1	P19320	739 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	C5AR1	P21730	350 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	RECQL	P46063	649 aa	Predicted RBP	3.67	□□□□□ -1.82
CD44-238	ENST00000534296	ADK	P55263	362 aa	Known RBP	3.67	□□□□□ -1.82
CD44-238	ENST00000534296	CTXN1	P60606	82 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	FSTL1	Q12841	308 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	THEMIS2	Q5TEJ8	643 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	ABHD17B	Q5VST6	288 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	TTC7B	Q86TV6	843 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	ZBTB46	Q86UZ6	589 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	SYT12	Q8IV01	421 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	MAPKAPK5	Q8IW41	473 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	ARHGEF19	Q8IW93	802 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	COLGALT2	Q8IYK4	626 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	NUP133	Q8WUM0	1156 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	CAVIN3	Q969G5	261 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	MED15	Q96RN5	788 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	PNKP	Q96T60	521 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	ZNF768	Q9H5H4	540 aa	Known RBP	3.67	□□□□□ -1.82
CD44-238	ENST00000534296	GNL3L	Q9NVN8	582 aa	Known RBP	3.67	□□□□□ -1.82
CD44-238	ENST00000534296	KCNE5	Q9UJ90	142 aa		3.67	□□□□□ -1.82
CD44-238	ENST00000534296	CENPVL1	A0A0U1RR11	272 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296		A0A1B0GTW7	788 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	ZNF185	O15231	689 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	SUV39H1	O43463	412 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	ARIH2	O95376	493 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	GC	P02774	474 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	CFI	P05156	583 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	GNAI3	P08754	354 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	HKR1	P10072	659 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	CKB	P12277	381 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	FPR1	P21462	350 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	GCSH	P23434	173 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	SMARCA1	P28370	1054 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	PCSK1	P29120	753 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	SLC6A9	P48067	706 aa		3.66	□□□□□ -1.82
CD44-238	ENST00000534296	INHBE	P58166	350 aa		3.66	□□□□□ -1.82

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