RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 NAA25Q14CX7 972 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 PTPN14Q15678 1187 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 WHAMMP3Q1A5X7 153 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 RABL6Q3YEC7 729 aaPredicted RBP5.98□□□□□ -1.45
CD44-236ENST00000533222 SMUG1Q53HV7 270 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 TRIM61Q5EBN2 209 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 BEND6Q5SZJ8 279 aaPredicted RBP5.98□□□□□ -1.45
CD44-236ENST00000533222 CCSAPQ6IQ19 270 aaPredicted RBP5.98□□□□□ -1.45
CD44-236ENST00000533222 IRGCQ6NXR0 463 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 LBX2Q6XYB7 198 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 CEP68Q76N32 757 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 TMC6Q7Z403 805 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 FAM186BQ8IYM0 893 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 LINC00469Q8N7U9 141 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 ARL10Q8N8L6 244 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 GSTCDQ8NEC7 633 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 RELTQ969Z4 430 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 COG3Q96JB2 828 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 CCT7Q99832 543 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 HERC2P3Q9BVR0 1158 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 AGXT2Q9BYV1 514 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 FAM192AQ9GZU8 254 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 CRTAC1Q9NQ79 661 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 CLDND1Q9NY35 253 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 WDR35Q9P2L0 1181 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 ORC3Q9UBD5 711 aaPredicted RBP5.98□□□□□ -1.45
CD44-236ENST00000533222 TPCN1Q9ULQ1 816 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 PCDHA8Q9Y5H6 950 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 FAM169AQ9Y6X4 670 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 KDM5BQ9UGL1 1544 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 CPSF1Q10570 1443 aaKnown RBP5.98□□□□□ -1.45
CD44-236ENST00000533222 PHLPP2Q6ZVD8 1323 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 SYNMO15061 1565 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 PLXNC1O60486 1568 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 HTR3EA5X5Y0 456 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 NUDT19A8MXV4 375 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 C22orf46C9J442 243 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 BIN1O00499 593 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 PLD2O14939 933 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 CASQ2O14958 399 aaPredicted RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 ZC3H11AO75152 810 aaKnown RBP eCLIP5.97□□□□□ -1.45
CD44-236ENST00000533222 URI1O94763 535 aaPredicted RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 NTRK1P04629 796 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 ALDH2P05091 517 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 DBHP09172 617 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 GLI4P10075 376 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 KCNA6P17658 529 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 PTPN2P17706 415 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 RXRAP19793 462 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 SDSP20132 328 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 AARSP49588 968 aaKnown RBP eCLIP5.97□□□□□ -1.45
CD44-236ENST00000533222 GNAQP50148 359 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 GNAI1P63096 354 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 UBE4AQ14139 1066 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 SNX17Q15036 470 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 MAPRE2Q15555 327 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 ELF2Q15723 593 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 VPS72Q15906 364 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 PLEKHO1Q53GL0 409 aaPredicted RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 CFAP58Q5T655 872 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 EGFLAMQ63HQ2 1017 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 MCTP1Q6DN14 999 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 PDXDC1Q6P996 788 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 LVRNQ6Q4G3 990 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 RSPO2Q6UXX9 243 aaPredicted RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 PRR23BQ6ZRT6 265 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 C16orf86Q6ZW13 317 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 BZW1Q7L1Q6 419 aaKnown RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 MAMDC2Q7Z304 686 aaPredicted RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 NANOGNBQ7Z5D8 188 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 SRGAP1Q7Z6B7 1085 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 MTDHQ86UE4 582 aaKnown RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 GRAMD2AQ8IUY3 354 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 IFNL3Q8IZI9 196 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 SPARTQ8N0X7 666 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 Q8N1Y9 231 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 SCAIQ8N9R8 606 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 SPERTQ8NA61 448 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 NLGN2Q8NFZ4 835 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 GSDMBQ8TAX9 411 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 MAIP1Q8WWC4 291 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 NCSTNQ92542 709 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 RABGGTAQ92696 567 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 SKA1Q96BD8 255 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 IL17RAQ96F46 866 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 CDCA5Q96FF9 252 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 C8orf48Q96LL4 319 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 DIRC2Q96SL1 478 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 UQCC2Q9BRT2 126 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 JAM3Q9BX67 310 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 MRPL4Q9BYD3 311 aaKnown RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 PUS3Q9BZE2 481 aaKnown RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 MIS12Q9H081 205 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 VCPKMTQ9H867 229 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 IPPKQ9H8X2 491 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 TMEM165Q9HC07 324 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 CD248Q9HCU0 757 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 SLC39A2Q9NP94 309 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 TCP11L1Q9NUJ3 509 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 TYW1Q9NV66 732 aaKnown RBP5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms