RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 VWA3AA6NCI4 1184 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 SFI1A8K8P3 1242 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 I3L4J1 428 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 ADAM12O43184 909 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 PAPLNO95428 1278 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 FGFR3P22607 806 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 HOXA9P31269 272 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 ELF1P32519 619 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 RAD51AP2Q09MP3 1159 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 UVSSAQ2YD98 709 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 CWF19L1Q69YN2 538 aaKnown RBP16.14■□□□□ 0.17
VPS28-215ENST00000531924 MPZL3Q6UWV2 235 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 C1orf186Q6ZWK4 172 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 DAW1Q8N136 415 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 KCTD17Q8N5Z5 321 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 PLIN2Q99541 437 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 GOLGA2P5Q9HBQ8 144 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 ARHGAP28Q9P2N2 729 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 ANKFY1Q9P2R3 1169 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 MTRRQ9UBK8 725 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 CDH7Q9ULB5 785 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 CDY1Q9Y6F8 540 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 DENND4AQ7Z401 1863 aa16.14■□□□□ 0.17
VPS28-215ENST00000531924 PLS3P13797 630 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 NPR3P17342 541 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 GUCY2CP25092 1073 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 GJB2P29033 226 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 TKTP29401 623 aaKnown RBP16.13■□□□□ 0.17
VPS28-215ENST00000531924 NTHL1P78549 312 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 ATP2C1P98194 919 aaPredicted RBP16.13■□□□□ 0.17
VPS28-215ENST00000531924 MTSS1LQ765P7 747 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 RTL10Q7L3V2 364 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 CEP120Q8N960 986 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 BICD1Q96G01 975 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 TMX3Q96JJ7 454 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 PTPRHQ9HD43 1115 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 SMC3Q9UQE7 1217 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 BACE2Q9Y5Z0 518 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 NUMBLQ9Y6R0 609 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 PLXNA3P51805 1871 aa16.13■□□□□ 0.17
VPS28-215ENST00000531924 ANHXE9PGG2 379 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 H0YCG3 227 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 PODXLO00592 558 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 PRRG1O14668 218 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 PI15O43692 258 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 RPL9P32969 192 aaKnown RBP16.12■□□□□ 0.17
VPS28-215ENST00000531924 BRCC3P46736 316 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 MCM2P49736 904 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 ARPP19P56211 112 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 HTR4Q13639 388 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 KCNK18Q7Z418 384 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 CCDC105Q8IYK2 499 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 DTWD2Q8NBA8 298 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 ST13P5Q8NFI4 369 aaPredicted RBP16.12■□□□□ 0.17
VPS28-215ENST00000531924 RASSF8Q8NHQ8 419 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 GPR152Q8TDT2 470 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 SPIRE2Q8WWL2 714 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 SNX27Q96L92 541 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 MMTAG2Q9BU76 263 aaKnown RBP16.12■□□□□ 0.17
VPS28-215ENST00000531924 KCND2Q9NZV8 630 aa16.12■□□□□ 0.17
VPS28-215ENST00000531924 H7C4K7 107 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 CLDN3O15551 220 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 TOM1L1O75674 476 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 LRG1P02750 347 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 PLA2G4BP0C869 781 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 KCNE1P15382 129 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 UBA7P41226 1012 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 MAPK7Q13164 816 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 NOLC1Q14978 699 aaKnown RBP eCLIP16.11■□□□□ 0.17
VPS28-215ENST00000531924 PABPC1LQ4VXU2 614 aaKnown RBP16.11■□□□□ 0.17
VPS28-215ENST00000531924 ARL6IP4Q66PJ3 421 aaKnown RBP16.11■□□□□ 0.17
VPS28-215ENST00000531924 ALKAL1Q6UXT8 129 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 SYT2Q8N9I0 419 aaPredicted RBP16.11■□□□□ 0.17
VPS28-215ENST00000531924 FGF13Q92913 245 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 CALML4Q96GE6 196 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 SHDQ96IW2 340 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 NTPCRQ9BSD7 190 aaKnown RBP16.11■□□□□ 0.17
VPS28-215ENST00000531924 TBC1D17Q9HA65 648 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 ARHGEF3Q9NR81 526 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 LARSQ9P2J5 1176 aaKnown RBP16.11■□□□□ 0.17
VPS28-215ENST00000531924 MRPS23Q9Y3D9 190 aaKnown RBP16.11■□□□□ 0.17
VPS28-215ENST00000531924 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.11■□□□□ 0.17
VPS28-215ENST00000531924 ZFHX2Q9C0A1 2572 aaPredicted RBP16.11■□□□□ 0.17
VPS28-215ENST00000531924 C2orf16Q68DN1 1984 aa16.11■□□□□ 0.17
VPS28-215ENST00000531924 KRBA1A5PL33 1030 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 SYN3O14994 580 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 KRT18P05783 430 aaKnown RBP16.1■□□□□ 0.17
VPS28-215ENST00000531924 POU2F2P09086 479 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 IGFBP6P24592 240 aaPredicted RBP16.1■□□□□ 0.17
VPS28-215ENST00000531924 MARCKSP29966 332 aaPredicted RBP16.1■□□□□ 0.17
VPS28-215ENST00000531924 MCM4P33991 863 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 SOX4Q06945 474 aaPredicted RBP16.1■□□□□ 0.17
VPS28-215ENST00000531924 ANGPT1Q15389 498 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 XKR4Q5GH76 650 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 SPECC1Q5M775 1068 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 VARS2Q5ST30 1063 aaKnown RBP16.1■□□□□ 0.17
VPS28-215ENST00000531924 HYIQ5T013 277 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 LARP1BQ659C4 914 aaKnown RBP16.1■□□□□ 0.17
VPS28-215ENST00000531924 PARM1Q6UWI2 310 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 ZPBP2Q6X784 338 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms