RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	ANKFY1	Q9P2R3	1169 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	DNAI1	Q9UI46	699 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	MYO6	Q9UM54	1294 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	EXOC7	Q9UPT5	735 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	FRMD4B	Q9Y2L6	1034 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	SLC4A7	Q9Y6M7	1214 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	SSU72P8	A0A1W2PR75	194 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474		C9IYK1	514 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	UPP2	O95045	317 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	NPTXR	O95502	500 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	AFP	P02771	609 aa	Known RBP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	NR3C1	P04150	777 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	HARS	P12081	509 aa	Known RBP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	MATR3	P43243	847 aa	Known RBP eCLIP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	RAB27A	P51159	221 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	KCNA1	Q09470	495 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	KCNH2	Q12809	1159 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	ZNF568	Q3ZCX4	644 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	UBXN11	Q5T124	520 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	FAM117B	Q6P1L5	589 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	SLC27A1	Q6PCB7	646 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	ZPBP2	Q6X784	338 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	SLC24A5	Q71RS6	500 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	TMCO2	Q7Z6W1	182 aa	Predicted RBP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	ZBTB33	Q86T24	672 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	TDH	Q8IZJ6	230 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	KCNN1	Q92952	543 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	ACO2	Q99798	780 aa	Known RBP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	ADPGK	Q9BRR6	497 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	TCHP	Q9BT92	498 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	STRA6	Q9BX79	667 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	EIF2A	Q9BY44	585 aa	Known RBP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	FAM105A	Q9NUU6	356 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	FBXL5	Q9UKA1	691 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	LRFN2	Q9ULH4	789 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	TNFSF13B	Q9Y275	285 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	PCDHB2	Q9Y5E7	798 aa		10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	BZW2	Q9Y6E2	419 aa	Known RBP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	MKI67	P46013	3256 aa	Known RBP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474	TNRC18	O15417	2968 aa	Predicted RBP	10.24	□□□□□ -0.77
NXF1-209	ENST00000531474		A0A1B0GUA9	196 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	TISP43	B9A030	160 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	MAPK13	O15264	365 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	TOM1L1	O75674	476 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	SKI	P12755	728 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	ATP2A2	P16615	1042 aa	Known RBP	10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	ANXA13	P27216	316 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	CETN1	Q12798	172 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	DCAF4L1	Q3SXM0	396 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	RASIP1	Q5U651	963 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	WDR59	Q6PJI9	974 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	MPZL3	Q6UWV2	235 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	GBP6	Q6ZN66	633 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	ECHDC2	Q86YB7	292 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	NPAS4	Q8IUM7	802 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	HERC6	Q8IVU3	1022 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	C12orf56	Q8IXR9	622 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	HACE1	Q8IYU2	909 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	EEF2KMT	Q96G04	330 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	ZBTB45	Q96K62	511 aa	Predicted RBP	10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	SLC9A7	Q96T83	725 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	APOL6	Q9BWW8	343 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	CDT1	Q9H211	546 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	IKZF4	Q9H2S9	585 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	DEF6	Q9H4E7	631 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	DMAC2	Q9NW81	257 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	PCDHB7	Q9Y5E2	793 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	ZMYM2	Q9UBW7	1377 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474	MYH11	P35749	1972 aa		10.23	□□□□□ -0.77
NXF1-209	ENST00000531474		A0A0U1RQF3	1178 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	CTAGE9	A4FU28	777 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	ANKRD63	C9JTQ0	380 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	RNF225	M0QZC1	329 aa	Predicted RBP	10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	CLDN3	O15551	220 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	URI1	O94763	535 aa	Predicted RBP	10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	PIGR	P01833	764 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	SERPING1	P05155	500 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	CCDC172	P0C7W6	258 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	STAG3L1	P0CL83	205 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	MCF2	P10911	925 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	HOXD13	P35453	343 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	FAM189B	P81408	668 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	EXOC3L4	Q17RC7	722 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	C10orf76	Q5T2E6	689 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	SFMBT2	Q5VUG0	894 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	SLC39A4	Q6P5W5	647 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	RRAGA	Q7L523	313 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	KIAA1328	Q86T90	577 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	FAM186B	Q8IYM0	893 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	SMG8	Q8ND04	991 aa	Known RBP	10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	PHOSPHO2	Q8TCD6	241 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	LPP	Q93052	612 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	PGBD4	Q96DM1	585 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	CHP1	Q99653	195 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	ZBED2	Q9BTP6	218 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	MSTO1	Q9BUK6	570 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	TRAIP	Q9BWF2	469 aa		10.22	□□□□□ -0.77
NXF1-209	ENST00000531474	PRO3102	Q9H379	93 aa		10.22	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms