RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 ARHGEF5Q12774 1597 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 BRD4O60885 1362 aaPredicted RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 ANKRD50Q9ULJ7 1429 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 NUP153P49790 1475 aaKnown RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 RALGAPBQ86X10 1494 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 PLEKHH2Q8IVE3 1493 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 FER1L4A9Z1Z3 1794 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 CDK13Q14004 1512 aaKnown RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 DISP1Q96F81 1524 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 KRTAP9-7A8MTY7 169 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 SCGB1D2O95969 90 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 POU2F2P09086 479 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 CT47B1P0C2W7 299 aaPredicted RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 ALOX15P16050 662 aaPredicted RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 PDCP20941 246 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 ACO1P21399 889 aaKnown RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 FPR1P21462 350 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 ANP32AP39687 249 aaKnown RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 FXR1P51114 621 aaKnown RBP eCLIP6.18□□□□□ -1.42
CD44-230ENST00000528922 TARDBPQ13148 414 aaKnown RBP eCLIP6.18□□□□□ -1.42
CD44-230ENST00000528922 ELAVL1Q15717 326 aaKnown RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 FAM47AQ5JRC9 791 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 RRP12Q5JTH9 1297 aaKnown RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 ZNF572Q7Z3I7 529 aaPredicted RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 CATIPQ7Z7H3 387 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 XYLT1Q86Y38 959 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 TTC9BQ8N6N2 239 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 SLC35B2Q8TB61 432 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 CCHCR1Q8TD31 782 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 KAT5Q92993 513 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 NUP88Q99567 741 aaPredicted RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 EPC1Q9H2F5 836 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 METTL14Q9HCE5 456 aaKnown RBP6.18□□□□□ -1.42
CD44-230ENST00000528922 LANCL2Q9NS86 450 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 SMPD4Q9NXE4 827 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 NUDCQ9Y266 331 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 PCDHB1Q9Y5F3 818 aa6.18□□□□□ -1.42
CD44-230ENST00000528922 EIF2AK4Q9P2K8 1649 aaKnown RBP6.17□□□□□ -1.42
CD44-230ENST00000528922 PRPF3O43395 683 aaKnown RBP6.17□□□□□ -1.42
CD44-230ENST00000528922 RFPL1O75677 317 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 PCSK1P29120 753 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 ATP8B2P98198 1209 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 DSC2Q02487 901 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 PPP2R5AQ15172 486 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 CSRP2Q16527 193 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 MFSD5Q6N075 450 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 ZNF585AQ6P3V2 769 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 PDZD4Q76G19 769 aaPredicted RBP6.17□□□□□ -1.42
CD44-230ENST00000528922 MIGA2Q7L4E1 593 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 SGMS1Q86VZ5 419 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 CHPFQ8IZ52 775 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 FAM9BQ8IZU0 186 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 PRR18Q8N4B5 295 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 CHST13Q8NET6 341 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 CYFIP2Q96F07 1278 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 DMRTA2Q96SC8 542 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 KRTAP3-1Q9BYR8 98 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 GTPBP4Q9BZE4 634 aaKnown RBP6.17□□□□□ -1.42
CD44-230ENST00000528922 SENP6Q9GZR1 1112 aaPredicted RBP6.17□□□□□ -1.42
CD44-230ENST00000528922 DEF6Q9H4E7 631 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 MANSC1Q9H8J5 431 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 AJAP1Q9UKB5 411 aaPredicted RBP6.17□□□□□ -1.42
CD44-230ENST00000528922 PNMA8BQ9ULN7 279 aaPredicted RBP6.17□□□□□ -1.42
CD44-230ENST00000528922 KIF7Q2M1P5 1343 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 USP47Q96K76 1375 aa6.17□□□□□ -1.42
CD44-230ENST00000528922 MBD5Q9P267 1494 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 KDM5CP41229 1560 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 LAMC1P11047 1609 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 VCAM1P19320 739 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 AKAP5P24588 427 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 FLT3LGP49771 235 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 EFEMP1Q12805 493 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 SP140Q13342 867 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 USP45Q70EL2 814 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 GPRIN1Q7Z2K8 1008 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 APBB1IPQ7Z5R6 666 aaPredicted RBP6.16□□□□□ -1.42
CD44-230ENST00000528922 MDGA1Q8NFP4 955 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 ST8SIA2Q92186 375 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 EDAQ92838 391 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 TSR2Q969E8 191 aaKnown RBP6.16□□□□□ -1.42
CD44-230ENST00000528922 ADOQ96SZ5 270 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 CPEB1Q9BZB8 566 aaKnown RBP6.16□□□□□ -1.42
CD44-230ENST00000528922 KLC2Q9H0B6 622 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 TCEAL9Q9UHQ7 104 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 NOB1Q9ULX3 412 aaKnown RBP6.16□□□□□ -1.42
CD44-230ENST00000528922 ACTL7AQ9Y615 435 aa6.16□□□□□ -1.42
CD44-230ENST00000528922 MYBBP1AQ9BQG0 1328 aaKnown RBP6.16□□□□□ -1.42
CD44-230ENST00000528922 DENND4BO75064 1496 aaPredicted RBP6.16□□□□□ -1.42
CD44-230ENST00000528922 ABCC2Q92887 1545 aa6.15□□□□□ -1.42
CD44-230ENST00000528922 GPATCH8Q9UKJ3 1502 aaKnown RBP6.15□□□□□ -1.42
CD44-230ENST00000528922 CAPN14A8MX76 684 aa6.15□□□□□ -1.43
CD44-230ENST00000528922 CXorf49A8MYA2 514 aaPredicted RBP6.15□□□□□ -1.43
CD44-230ENST00000528922 TSPAN6O43657 245 aa6.15□□□□□ -1.43
CD44-230ENST00000528922 IL2RBP14784 551 aa6.15□□□□□ -1.43
CD44-230ENST00000528922 GNAT2P19087 354 aa6.15□□□□□ -1.43
CD44-230ENST00000528922 DDCP20711 480 aa6.15□□□□□ -1.43
CD44-230ENST00000528922 MAGEA10P43363 369 aaPredicted RBP6.15□□□□□ -1.43
CD44-230ENST00000528922 CDC42EP1Q00587 391 aa6.15□□□□□ -1.43
CD44-230ENST00000528922 HHEXQ03014 270 aa6.15□□□□□ -1.43
CD44-230ENST00000528922 MTM1Q13496 603 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms