RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 TMEM179Q6ZVK1 233 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 IQCA1Q86XH1 822 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 REXO1L1PQ8IX06 675 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 CCDC144CPQ8IYA2 1237 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 KIAA2013Q8IYS2 634 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 ZNF513Q8N8E2 541 aaPredicted RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 N4BP2L2Q92802 583 aaPredicted RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 PPP2R3CQ969Q6 453 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 CCDC47Q96A33 483 aaKnown RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 PPP1R14BQ96C90 147 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 FAXDC2Q96IV6 333 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 C17orf80Q9BSJ5 609 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 TEX13BQ9BXU2 312 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 GSX1Q9H4S2 264 aaPredicted RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 ACSS3Q9H6R3 686 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 VCPKMTQ9H867 229 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 ATP6V0A4Q9HBG4 840 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 ALG13Q9NP73 1137 aaKnown RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 FAM105AQ9NUU6 356 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 FAM8A1Q9UBU6 413 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 SMC3Q9UQE7 1217 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 ACACBO00763 2458 aa5.52□□□□□ -1.53
CD44-218ENST00000525469 KMT2BQ9UMN6 2715 aaPredicted RBP5.52□□□□□ -1.53
CD44-218ENST00000525469 SCN10AQ9Y5Y9 1956 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ATRXP46100 2492 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 MAP1BP46821 2468 aaKnown RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 MYH7BA7E2Y1 1941 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 EP300Q09472 2414 aaPredicted RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 PRR19A6NJB7 356 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 BECN2A8MW95 431 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 H3BNC9 293 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 CYP26A1O43174 497 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 CBFA2T2O43439 604 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ZBED4O75132 1171 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 TADA3O75528 432 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ECEL1O95672 775 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 WNT11O96014 354 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 F13BP05160 661 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 MYL3P08590 195 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ZSCAN22P10073 491 aaPredicted RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 SPINK2P20155 84 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 SFPQP23246 707 aaKnown RBP eCLIP5.51□□□□□ -1.53
CD44-218ENST00000525469 ARNTP27540 789 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 GUCY1A2P33402 732 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 SHMT1P34896 483 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 GCKP35557 465 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 CHMP4BP1P59074 171 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 KRT85P78386 507 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 AKAP17AQ02040 695 aaKnown RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 APOBRQ0VD83 1088 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ERCC6LQ2NKX8 1250 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 CYP27C1Q4G0S4 372 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 CEP85LQ5SZL2 805 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ANKRD45Q5TZF3 282 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 SCARA3Q6AZY7 606 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 IQSEC1Q6DN90 963 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 KLHL10Q6JEL2 608 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 RBM43Q6ZSC3 357 aaKnown RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 DTX1Q86Y01 620 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 HOMER1Q86YM7 354 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 NPAS4Q8IUM7 802 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 CPXCR1Q8N123 301 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 SPC24Q8NBT2 197 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 LSM14AQ8ND56 463 aaKnown RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 AFAP1L1Q8TED9 768 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ZNF483Q8TF39 744 aaPredicted RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 ASIC4Q96FT7 647 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 RPGRIP1Q96KN7 1286 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ZSCAN31Q96LW9 406 aaPredicted RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 RIPOR3Q96MK2 946 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 USP44Q9H0E7 712 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 SEMA6CQ9H3T2 930 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 MFSD1Q9H3U5 465 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 CCDC86Q9H6F5 360 aaKnown RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 C12orf49Q9H741 205 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 CBX8Q9HC52 389 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ZBTB40Q9NUA8 1239 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 PDRG1Q9NUG6 133 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 CRIM1Q9NZV1 1036 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 FBXO40Q9UH90 709 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ZNF214Q9UL59 606 aaPredicted RBP5.51□□□□□ -1.53
CD44-218ENST00000525469 PPP1R9AQ9ULJ8 1098 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 ADAMTS5Q9UNA0 930 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 Q9Y3F1 56 aa5.51□□□□□ -1.53
CD44-218ENST00000525469 GVINP1Q7Z2Y8 2422 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 ASTN1O14525 1302 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 CHD8Q9HCK8 2581 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 DNAJC25-GNG10A0A024R161 153 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 ENO4A6NNW6 628 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 LOC730098B7Z3J9 87 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 TMPRSS2O15393 492 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 SHOX2O60902 331 aaPredicted RBP5.5□□□□□ -1.53
CD44-218ENST00000525469 AMHP03971 560 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 FESP07332 822 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 UBTFL1P0CB47 393 aaPredicted RBP5.5□□□□□ -1.53
CD44-218ENST00000525469 MYBL2P10244 700 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 CYP7A1P22680 504 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 PAX7P23759 505 aa5.5□□□□□ -1.53
CD44-218ENST00000525469 LTBRP36941 435 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms