RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 TMEM140Q9NV12 185 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 MOCS1Q9NZB8 636 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 ANKFY1Q9P2R3 1169 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 PCDHA13Q9Y5I0 950 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 MYBBP1AQ9BQG0 1328 aaKnown RBP5.42□□□□□ -1.54
CD44-217ENST00000525348 GRID2IPA4D2P6 1211 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 DIRC3C9JPN6 131 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 HTRA2O43464 458 aaPredicted RBP5.41□□□□□ -1.54
CD44-217ENST00000525348 ZRANB2O95218 330 aaKnown RBP eCLIP5.41□□□□□ -1.54
CD44-217ENST00000525348 ABHD16AO95870 558 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 LAG3P18627 525 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 DDCP20711 480 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 KRT85P78386 507 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 IL10RAQ13651 578 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 UBXN2BQ14CS0 331 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 PTPROQ16827 1216 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 TIGD2Q4W5G0 525 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 PLXDC1Q8IUK5 500 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 RHOT2Q8IXI1 618 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 DRC7Q8IY82 874 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 SYNE4Q8N205 404 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.41□□□□□ -1.54
CD44-217ENST00000525348 OR56A1Q8NGH5 318 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 CYFIP2Q96F07 1278 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 C7orf25Q9BPX7 421 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 ZSWIM1Q9BR11 485 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 MANSC1Q9H8J5 431 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 KLHL11Q9NVR0 708 aa5.41□□□□□ -1.54
CD44-217ENST00000525348 TCRBV7S2A1N4TA0A589 114 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 GAGE12BA1L429 117 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 GAGE12HA6NDE8 117 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 UNC119BA6NIH7 251 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 POMCP01189 267 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 TGFB2P61812 414 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 KIF23Q02241 960 aaPredicted RBP5.4□□□□□ -1.54
CD44-217ENST00000525348 PTPN21Q16825 1174 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 BRDTQ58F21 947 aaPredicted RBP5.4□□□□□ -1.54
CD44-217ENST00000525348 KCNV1Q6PIU1 500 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 CPEB3Q8NE35 698 aaKnown RBP5.4□□□□□ -1.54
CD44-217ENST00000525348 KAT5Q92993 513 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 COA7Q96BR5 231 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 FAM30AQ9NZY2 134 aa5.4□□□□□ -1.54
CD44-217ENST00000525348 CCDC154A6NI56 674 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 FOXN1O15353 648 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 CFIP05156 583 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 SLC6A4P31645 630 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 INHBCP55103 352 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 COL10A1Q03692 680 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 OCA2Q04671 838 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 LY6G5CQ5SRR4 150 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 TSHZ3Q63HK5 1081 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 IFI44Q8TCB0 444 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 TMX3Q96JJ7 454 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 DMRTA2Q96SC8 542 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 AGAP2Q99490 1192 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 TTPALQ9BTX7 342 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 SLC13A1Q9BZW2 595 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 PCDHB1Q9Y5F3 818 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 FPGT-TNNI3KV9GXZ4 949 aa5.39□□□□□ -1.55
CD44-217ENST00000525348 COL4A3Q01955 1670 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 SBK3P0C264 359 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 PROZP22891 400 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 GCSHP23434 173 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 BMPR1AP36894 532 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 ZEB1P37275 1124 aaPredicted RBP5.38□□□□□ -1.55
CD44-217ENST00000525348 CTXN1P60606 82 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 SCAPQ12770 1279 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 RESTQ13127 1097 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 TP53BP2Q13625 1128 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 B3GNTL1Q67FW5 361 aaPredicted RBP5.38□□□□□ -1.55
CD44-217ENST00000525348 LAIR1Q6GTX8 287 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 MRGPRGQ86SM5 289 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 PNMA8AQ86V59 439 aaPredicted RBP5.38□□□□□ -1.55
CD44-217ENST00000525348 MAPKAPK5Q8IW41 473 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 ARHGEF19Q8IW93 802 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 FAM177A1Q8N128 213 aaPredicted RBP5.38□□□□□ -1.55
CD44-217ENST00000525348 HDAC10Q969S8 669 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 MRGPRX4Q96LA9 322 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 CEP89Q96ST8 783 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 WDR11Q9BZH6 1224 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 SERHL2Q9H4I8 314 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 USP25Q9UHP3 1055 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 DMRT1Q9Y5R6 373 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 AATKQ6ZMQ8 1374 aa5.38□□□□□ -1.55
CD44-217ENST00000525348 A0A087X1B8 175 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 ANKRD62A6NC57 917 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 TEX33O43247 280 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 SPDEFO95238 335 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 SPATA31D3P0C874 917 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 FGFR4P22455 802 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 DDX6P26196 483 aaKnown RBP eCLIP5.37□□□□□ -1.55
CD44-217ENST00000525348 SLC16A1P53985 500 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 ZNF280AP59817 542 aaPredicted RBP5.37□□□□□ -1.55
CD44-217ENST00000525348 NOMO3P69849 1222 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 CDC42EP1Q00587 391 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 SLFN5Q08AF3 891 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 PTPAQ15257 358 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 NOMO2Q5JPE7 1267 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 DACT2Q5SW24 774 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 SPATA31D4Q6ZUB0 917 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms