RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 RHOT2Q8IXI1 618 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 AMOTL1Q8IY63 956 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 CNTD1Q8N815 330 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 SUPT20HQ8NEM7 779 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 OR56A1Q8NGH5 318 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.2□□□□□ -1.9
CD44-216ENST00000525293 NRG4Q8WWG1 115 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 DPF2Q92785 391 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 ADAM2Q99965 735 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 TMX1Q9H3N1 280 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 SPC25Q9HBM1 224 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 TMEM140Q9NV12 185 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 KLHL11Q9NVR0 708 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 RNF181Q9P0P0 153 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 SLC23A1Q9UHI7 598 aa3.2□□□□□ -1.9
CD44-216ENST00000525293 RUVBL1Q9Y265 456 aaKnown RBP3.2□□□□□ -1.9
CD44-216ENST00000525293 PIPSLA2A3N6 862 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 FAM171A2A8MVW0 826 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 K7ESF4 209 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 PRSS23O95084 383 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 SPDEFO95238 335 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 AMY1AP04745 511 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 CFIP05156 583 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 ELANEP08246 267 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 SLC6A2P23975 617 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 PCSK1P29120 753 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 MXRA7P84157 204 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 TAP1Q03518 808 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 SPDYE7PQ495Y7 208 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 OTUD7BQ6GQQ9 843 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 SEM1Q6ZVN7 128 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 TICAM2Q86XR7 235 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 DRC7Q8IY82 874 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 TMEM132CQ8N3T6 1108 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 ZGPATQ8N5A5 531 aaKnown RBP3.19□□□□□ -1.9
CD44-216ENST00000525293 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.19□□□□□ -1.9
CD44-216ENST00000525293 CASKIN2Q8WXE0 1202 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 ASB10Q8WXI3 467 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 CAVIN3Q969G5 261 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 CYFIP2Q96F07 1278 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 CRAMP1Q96RY5 1269 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 ZSWIM1Q9BR11 485 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 REXO4Q9GZR2 422 aaKnown RBP3.19□□□□□ -1.9
CD44-216ENST00000525293 PUS7LQ9H0K6 701 aaKnown RBP3.19□□□□□ -1.9
CD44-216ENST00000525293 TOR3AQ9H497 397 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 ZNF277Q9NRM2 450 aaPredicted RBP3.19□□□□□ -1.9
CD44-216ENST00000525293 FBXO34Q9NWN3 711 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 ZNHIT2Q9UHR6 403 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 INTUQ9ULD6 942 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 ATP8A1Q9Y2Q0 1164 aa3.19□□□□□ -1.9
CD44-216ENST00000525293 MYBBP1AQ9BQG0 1328 aaKnown RBP3.19□□□□□ -1.9
CD44-216ENST00000525293 AATKQ6ZMQ8 1374 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 SBNO2Q9Y2G9 1366 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 A0A1B0GTW7 788 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 TCRBV7S2A1N4TA0A589 114 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 CCDC78A2IDD5 438 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 TRIM75PA6NK02 468 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 MARCH11A6NNE9 402 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 TEX33O43247 280 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 PPFIA2O75334 1257 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 GPR32O75388 356 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 CDKL5O76039 1030 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 NUDT3O95989 172 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 FOSP01100 380 aaPredicted RBP3.18□□□□□ -1.9
CD44-216ENST00000525293 LMNAP02545 664 aaKnown RBP3.18□□□□□ -1.9
CD44-216ENST00000525293 HKR1P10072 659 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 ITGAMP11215 1152 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 DDCP20711 480 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 GCSHP23434 173 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 ADRA1BP35368 520 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 IARSP41252 1262 aaKnown RBP3.18□□□□□ -1.9
CD44-216ENST00000525293 AVPR1BP47901 424 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 HSD11B2P80365 405 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 OCA2Q04671 838 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 ACAP2Q15057 778 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 ABHD17BQ5VST6 288 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 B3GNTL1Q67FW5 361 aaPredicted RBP3.18□□□□□ -1.9
CD44-216ENST00000525293 OLFML1Q6UWY5 402 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 RHOT1Q8IXI2 618 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 RNF31Q96EP0 1072 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 FUBP3Q96I24 572 aaKnown RBP eCLIP3.18□□□□□ -1.9
CD44-216ENST00000525293 C7orf25Q9BPX7 421 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 ALOXE3Q9BYJ1 711 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 GSTO2Q9H4Y5 243 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 MANSC1Q9H8J5 431 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 SYBUQ9NX95 663 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 FAM30AQ9NZY2 134 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 NOX1Q9Y5S8 564 aa3.18□□□□□ -1.9
CD44-216ENST00000525293 EPN1Q9Y6I3 576 aaPredicted RBP3.18□□□□□ -1.9
CD44-216ENST00000525293 KIAA0391O15091 583 aaKnown RBP3.17□□□□□ -1.9
CD44-216ENST00000525293 GPANK1O95872 356 aa3.17□□□□□ -1.9
CD44-216ENST00000525293 MT-CO1P00395 513 aa3.17□□□□□ -1.9
CD44-216ENST00000525293 EGR2P11161 476 aaPredicted RBP3.17□□□□□ -1.9
CD44-216ENST00000525293 CKBP12277 381 aa3.17□□□□□ -1.9
CD44-216ENST00000525293 FGFR4P22455 802 aa3.17□□□□□ -1.9
CD44-216ENST00000525293 PLA2G5P39877 138 aa3.17□□□□□ -1.9
CD44-216ENST00000525293 GUCY2FP51841 1108 aa3.17□□□□□ -1.9
CD44-216ENST00000525293 ATP8B2P98198 1209 aa3.17□□□□□ -1.9
CD44-216ENST00000525293 CREMQ03060 361 aa3.17□□□□□ -1.9
CD44-216ENST00000525293 ITKQ08881 620 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms