RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 TCERG1LQ5VWI1 586 aa17.63■□□□□ 0.41
LSM1-204ENST00000522515 CASD1Q96PB1 797 aa17.63■□□□□ 0.41
LSM1-204ENST00000522515 RPS6KC1Q96S38 1066 aa17.63■□□□□ 0.41
LSM1-204ENST00000522515 CGRRF1Q99675 332 aa17.63■□□□□ 0.41
LSM1-204ENST00000522515 MTIF3Q9H2K0 278 aaKnown RBP17.63■□□□□ 0.41
LSM1-204ENST00000522515 HOXA2O43364 376 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 POMCP01189 267 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 TNNI1P19237 187 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 TPM4P67936 248 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 ENPEPQ07075 957 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 KRT31Q15323 416 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 ZBTB6Q15916 424 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 NOMO2Q5JPE7 1267 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 USP37Q86T82 979 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 WDR49Q8IV35 697 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 ABI1Q8IZP0 508 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 OR5B17Q8NGF7 314 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 ZNF516Q92618 1163 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 KIF12Q96FN5 646 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 PPP1R10Q96QC0 940 aaKnown RBP17.62■□□□□ 0.41
LSM1-204ENST00000522515 TUBGCP2Q9BSJ2 902 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 C2CD2Q9Y426 696 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.62■□□□□ 0.41
LSM1-204ENST00000522515 COL4A6Q14031 1691 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 TFAMQ00059 246 aaKnown RBP17.62■□□□□ 0.41
LSM1-204ENST00000522515 PPP3CAQ08209 521 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 TMEM132DQ14C87 1099 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 NAB2Q15742 525 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 APTXQ7Z2E3 356 aaKnown RBP17.62■□□□□ 0.41
LSM1-204ENST00000522515 TMEM130Q8N3G9 435 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 C18orf25Q96B23 403 aaPredicted RBP17.62■□□□□ 0.41
LSM1-204ENST00000522515 RNPC3Q96LT9 517 aaKnown RBP17.62■□□□□ 0.41
LSM1-204ENST00000522515 SLC9A7Q96T83 725 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 TMEM117Q9H0C3 514 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 MMRN2Q9H8L6 949 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 INTS13Q9NVM9 706 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 TAB2Q9NYJ8 693 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 LIMA1Q9UHB6 759 aaKnown RBP17.62■□□□□ 0.41
LSM1-204ENST00000522515 DERAQ9Y315 318 aa17.62■□□□□ 0.41
LSM1-204ENST00000522515 PDCD11Q14690 1871 aaKnown RBP17.61■□□□□ 0.41
LSM1-204ENST00000522515 FNDC1Q4ZHG4 1894 aaPredicted RBP17.61■□□□□ 0.41
LSM1-204ENST00000522515 TBKBP1A7MCY6 615 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 GJB5O95377 273 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 THP07101 528 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 PRKCSHP14314 528 aaPredicted RBP17.61■□□□□ 0.41
LSM1-204ENST00000522515 ATP2A2P16615 1042 aaKnown RBP17.61■□□□□ 0.41
LSM1-204ENST00000522515 GCLMP48507 274 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 MAN2A1Q16706 1144 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 PAN2Q504Q3 1202 aaKnown RBP17.61■□□□□ 0.41
LSM1-204ENST00000522515 MIIPQ5JXC2 388 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 PHOSPHO2Q8TCD6 241 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 URGCPQ8TCY9 931 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 ZNF689Q96CS4 500 aaPredicted RBP17.61■□□□□ 0.41
LSM1-204ENST00000522515 MTMR12Q9C0I1 747 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 VPS16Q9H269 839 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 RC3H2Q9HBD1 1191 aaKnown RBP17.61■□□□□ 0.41
LSM1-204ENST00000522515 TBC1D13Q9NVG8 400 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 TUBGCP4Q9UGJ1 667 aa17.61■□□□□ 0.41
LSM1-204ENST00000522515 LRRC10BA6NIK2 292 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 GUCY2FP51841 1108 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 SOX4Q06945 474 aaPredicted RBP17.6■□□□□ 0.41
LSM1-204ENST00000522515 KCNH2Q12809 1159 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 GRIK3Q13003 919 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 DUOXA2Q1HG44 320 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 NT5DC4Q86YG4 428 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 HERC6Q8IVU3 1022 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 ANKRD20A12PQ8NF67 263 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 TSPAN18Q96SJ8 248 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 GOLGA2P5Q9HBQ8 144 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 KANSL3Q9P2N6 904 aa17.6■□□□□ 0.41
LSM1-204ENST00000522515 UBQLN1Q9UMX0 589 aaKnown RBP17.6■□□□□ 0.41
LSM1-204ENST00000522515 TDRD15B5MCY1 1934 aaKnown RBP17.6■□□□□ 0.41
LSM1-204ENST00000522515 B4GALT3O60512 393 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 DDHD2O94830 711 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 C4BPAP04003 597 aaKnown RBP17.59■□□□□ 0.41
LSM1-204ENST00000522515 TMEM191BP0C7N4 346 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 COPB1P53618 953 aaKnown RBP17.59■□□□□ 0.41
LSM1-204ENST00000522515 CBWD6Q4V339 395 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 VWA3BQ502W6 1294 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 CBWD3Q5JTY5 395 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 CBWD5Q5RIA9 395 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 SCARA3Q6AZY7 606 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 SV2AQ7L0J3 742 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 ZNF280BQ86YH2 543 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 CACTINQ8WUQ7 758 aaKnown RBP17.59■□□□□ 0.41
LSM1-204ENST00000522515 ANKRD36BP1Q96IX9 119 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 ZBED2Q9BTP6 218 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 NDST4Q9H3R1 872 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 HCSTQ9UBK5 93 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 PDE4DIPQ5VU43 2346 aa17.59■□□□□ 0.41
LSM1-204ENST00000522515 STX10O60499 249 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 AFPP02771 609 aaKnown RBP17.58■□□□□ 0.41
LSM1-204ENST00000522515 BMP8BP34820 402 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 FMO5P49326 533 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 HTRA4P83105 476 aaPredicted RBP17.58■□□□□ 0.41
LSM1-204ENST00000522515 TDRD10Q5VZ19 366 aaKnown RBP17.58■□□□□ 0.41
LSM1-204ENST00000522515 FAM109BQ6ICB4 259 aaPredicted RBP17.58■□□□□ 0.41
LSM1-204ENST00000522515 C15orf39Q6ZRI6 1047 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 TRAPPC11Q7Z392 1133 aa17.58■□□□□ 0.41
LSM1-204ENST00000522515 C1orf127Q8N9H9 656 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms