RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ADAMTS3O15072 1205 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 PLEKHA8P1O95397 391 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 TATP17735 454 aaPredicted RBP12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 PLCG1P19174 1290 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 DDHD1Q8NEL9 900 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 PLEKHO2Q8TD55 490 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 NSMCE3Q96MG7 304 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 PRPF18Q99633 342 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 EPB41L1Q9H4G0 881 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 KBTBD4Q9NVX7 518 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 RRN3Q9NYV6 651 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 CEP126Q9P2H0 1117 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 DMTF1Q9Y222 760 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 MAD1L1Q9Y6D9 718 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 TRAF5O00463 557 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 C2CD2LO14523 706 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 SMIM18P0DKX4 95 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 CA4P22748 312 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 C3orf62Q6ZUJ4 267 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 TTC7BQ86TV6 843 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 SFR1Q86XK3 245 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 RASGRP4Q8TDF6 673 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 HES6Q96HZ4 224 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 VPS50Q96JG6 964 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 PANX3Q96QZ0 392 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 PLGRKTQ9HBL7 147 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 CARD8Q9Y2G2 431 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 GSTTP1A0A1W2PQM5 241 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TTLL1O95922 423 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 HSPA8P11142 646 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 CHKAP35790 457 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 DRG2P55039 364 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TRIP10Q15642 601 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TRIP13Q15645 432 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 CROCCP3Q8IVE0 287 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 FBXO27Q8NI29 283 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 MTBPQ96DY7 904 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 RNF26Q9BY78 433 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 EDEM3Q9BZQ6 932 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 PAIP1Q9H074 479 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 STXBP5LQ9Y2K9 1186 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 GIT1Q9Y2X7 761 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 ADAMTS13Q76LX8 1427 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 SFI1A8K8P3 1242 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 NAT2P11245 290 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 CYP2C9P11712 490 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 KRT15P19012 456 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 PEX2P28328 305 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 IL15P40933 162 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 PTGIRP43119 386 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TRPC1P48995 793 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 GRM2Q14416 872 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 PPP2R5EQ16537 467 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TTC27Q6P3X3 843 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 CNNM4Q6P4Q7 775 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TRMT10CQ7L0Y3 403 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 GALNT4Q8N4A0 578 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 GLIS3Q8NEA6 775 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 CCDC110Q8TBZ0 833 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 PTCD3Q96EY7 689 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 MRGBPQ9NV56 204 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 DKK3Q9UBP4 350 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 GRID1Q9ULK0 1009 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 AK5Q9Y6K8 562 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 NWD2Q9ULI1 1742 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TSPY2A6NKD2 308 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 PODXLO00592 558 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TSPY3P0CV98 308 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TSPY8P0CW00 308 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TSPY1Q01534 308 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 PFKPQ01813 784 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 FOLH1Q04609 750 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 KDSRQ06136 332 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 MSLNQ13421 630 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 CENPPQ6IPU0 288 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 ZNF530Q6P9A1 599 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 FBXL19Q6PCT2 694 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 ANKRD13DQ6ZTN6 518 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 SLC26A7Q8TE54 656 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 STARD8Q92502 1023 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 MAELQ96JY0 434 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 GPATCH1Q9BRR8 931 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 FHDC1Q9C0D6 1143 aaPredicted RBP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 SLAIN2Q9P270 581 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 PCDHGB4Q9UN71 923 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 PCDHGB5Q9Y5G0 923 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 TACC3Q9Y6A5 838 aa12.75□□□□□ -0.37
LIMCH1-213ENST00000511496 ARHGAP42A6NI28 874 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 CYP26A1O43174 497 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 ENO1P06733 434 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 ENDOUP21128 410 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 PMLP29590 882 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 BCAP31P51572 246 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 ZYXQ15942 572 aaKnown RBP12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 ANKRD20A4Q4UJ75 823 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 DEPDC1Q5TB30 811 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 UGT2A3Q6UWM9 527 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 POU5F2Q8N7G0 328 aa12.74□□□□□ -0.37
LIMCH1-213ENST00000511496 GDPD5Q8WTR4 605 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms