RNA–Protein interactions for RNA: ENST00000510195.1

SNF8-208, Transcript of SNF8, ESCRT-II complex subunit, human

TSL 2

Gene SNF8, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNF8-208	ENST00000510195	PDGFB	P01127	241 aa	Predicted RBP	29.2	■■■□□ 2.26
SNF8-208	ENST00000510195	KCNE1	P15382	129 aa		29.2	■■■□□ 2.26
SNF8-208	ENST00000510195	SCP2	P22307	547 aa		29.2	■■■□□ 2.26
SNF8-208	ENST00000510195	HOXA9	P31269	272 aa		29.2	■■■□□ 2.26
SNF8-208	ENST00000510195	GBP2	P32456	591 aa	Predicted RBP	29.2	■■■□□ 2.26
SNF8-208	ENST00000510195	VCP	P55072	806 aa	Known RBP	29.2	■■■□□ 2.26
SNF8-208	ENST00000510195	CEP120	Q8N960	986 aa		29.2	■■■□□ 2.26
SNF8-208	ENST00000510195	DUSP12	Q9UNI6	340 aa		29.2	■■■□□ 2.26
SNF8-208	ENST00000510195	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	29.2	■■■□□ 2.26
SNF8-208	ENST00000510195	MYH11	P35749	1972 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	MYB	P10242	640 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	RAB33A	Q14088	237 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	UVSSA	Q2YD98	709 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	LIN9	Q5TKA1	542 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	ZPBP2	Q6X784	338 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	ALYREF	Q86V81	257 aa	Known RBP	29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	CALML4	Q96GE6	196 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	SNX27	Q96L92	541 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	SMOC2	Q9H3U7	446 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	CNTN3	Q9P232	1028 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	MTRR	Q9UBK8	725 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	ODF2L	Q9ULJ1	636 aa		29.19	■■■□□ 2.26
SNF8-208	ENST00000510195	CACNA1H	O95180	2353 aa		29.18	■■■□□ 2.26
SNF8-208	ENST00000510195	VWA8	A3KMH1	1905 aa		29.18	■■■□□ 2.26
SNF8-208	ENST00000510195	POU2F2	P09086	479 aa		29.18	■■■□□ 2.26
SNF8-208	ENST00000510195	MAPT	P10636	758 aa	Known RBP	29.18	■■■□□ 2.26
SNF8-208	ENST00000510195	UBA7	P41226	1012 aa		29.18	■■■□□ 2.26
SNF8-208	ENST00000510195	CD300LG	Q6UXG3	332 aa		29.18	■■■□□ 2.26
SNF8-208	ENST00000510195	ANKS3	Q6ZW76	656 aa		29.18	■■■□□ 2.26
SNF8-208	ENST00000510195	BACE2	Q9Y5Z0	518 aa		29.18	■■■□□ 2.26
SNF8-208	ENST00000510195	RPL9	P32969	192 aa	Known RBP	29.17	■■■□□ 2.26
SNF8-208	ENST00000510195	LONP1	P36776	959 aa	Known RBP	29.17	■■■□□ 2.26
SNF8-208	ENST00000510195	MRE11	P49959	708 aa		29.17	■■■□□ 2.26
SNF8-208	ENST00000510195	CLCN5	P51795	746 aa		29.17	■■■□□ 2.26
SNF8-208	ENST00000510195	OSTN	P61366	133 aa		29.17	■■■□□ 2.26
SNF8-208	ENST00000510195	RAD51AP2	Q09MP3	1159 aa		29.17	■■■□□ 2.26
SNF8-208	ENST00000510195	TCF15	Q12870	199 aa		29.17	■■■□□ 2.26
SNF8-208	ENST00000510195	PLIN2	Q99541	437 aa		29.17	■■■□□ 2.26
SNF8-208	ENST00000510195	MFSD1	Q9H3U5	465 aa		29.17	■■■□□ 2.26
SNF8-208	ENST00000510195	CIT	O14578	2027 aa		29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	DOCK8	Q8NF50	2099 aa		29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	OR1D2	P34982	312 aa		29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	CUL4A	Q13619	759 aa		29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	NOLC1	Q14978	699 aa	Known RBP eCLIP	29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	ARSH	Q5FYA8	562 aa		29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	PPM1L	Q5SGD2	360 aa		29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	ASTL	Q6HA08	431 aa	Predicted RBP	29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	MYADM	Q96S97	322 aa		29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	GOLGA2P5	Q9HBQ8	144 aa		29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	29.16	■■■□□ 2.26
SNF8-208	ENST00000510195	CLDN3	O15551	220 aa		29.15	■■■□□ 2.26
SNF8-208	ENST00000510195	XYLB	O75191	536 aa		29.15	■■■□□ 2.26
SNF8-208	ENST00000510195	C8A	P07357	584 aa		29.15	■■■□□ 2.26
SNF8-208	ENST00000510195	LAMP2	P13473	410 aa		29.15	■■■□□ 2.26
SNF8-208	ENST00000510195	PDC	P20941	246 aa		29.15	■■■□□ 2.26
SNF8-208	ENST00000510195	NCKAP1L	P55160	1127 aa		29.15	■■■□□ 2.26
SNF8-208	ENST00000510195	SOX4	Q06945	474 aa	Predicted RBP	29.15	■■■□□ 2.26
SNF8-208	ENST00000510195	MCL1	Q07820	350 aa		29.15	■■■□□ 2.26
SNF8-208	ENST00000510195	C3orf58	Q8NDZ4	430 aa		29.15	■■■□□ 2.26
SNF8-208	ENST00000510195	ZMAT2	Q96NC0	199 aa	Known RBP	29.15	■■■□□ 2.26
SNF8-208	ENST00000510195	PODXL	O00592	558 aa		29.14	■■■□□ 2.26
SNF8-208	ENST00000510195	ZBTB45	Q96K62	511 aa	Predicted RBP	29.14	■■■□□ 2.26
SNF8-208	ENST00000510195	SYN3	O14994	580 aa		29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	ADAM12	O43184	909 aa		29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	GALR2	O43603	387 aa	Predicted RBP	29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	IGFBP6	P24592	240 aa	Predicted RBP	29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	TKT	P29401	623 aa	Known RBP	29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	KYAT1	Q16773	422 aa		29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	AXDND1	Q5T1B0	1012 aa	Predicted RBP	29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	PLEKHA5	Q9HAU0	1116 aa		29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	ANKFY1	Q9P2R3	1169 aa		29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	WNT16	Q9UBV4	365 aa		29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	CDY1	Q9Y6F8	540 aa		29.13	■■■□□ 2.25
SNF8-208	ENST00000510195	FSHR	P23945	695 aa		29.12	■■■□□ 2.25
SNF8-208	ENST00000510195	ABCD1	P33897	745 aa		29.12	■■■□□ 2.25
SNF8-208	ENST00000510195	SF3A1	Q15459	793 aa	Known RBP	29.12	■■■□□ 2.25
SNF8-208	ENST00000510195	SLC8B1	Q6J4K2	584 aa		29.12	■■■□□ 2.25
SNF8-208	ENST00000510195	GET4	Q7L5D6	327 aa	Predicted RBP	29.12	■■■□□ 2.25
SNF8-208	ENST00000510195	HAUS6	Q7Z4H7	955 aa		29.12	■■■□□ 2.25
SNF8-208	ENST00000510195	SLC44A3	Q8N4M1	653 aa		29.12	■■■□□ 2.25
SNF8-208	ENST00000510195	FBXL21	Q9UKT6	434 aa		29.12	■■■□□ 2.25
SNF8-208	ENST00000510195	ANHX	E9PGG2	379 aa		29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	CLTA	P09496	248 aa		29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	BRCC3	P46736	316 aa		29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	ZNF131	P52739	623 aa		29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	SLC10A6	Q3KNW5	377 aa		29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	GRASP	Q7Z6J2	395 aa	Predicted RBP	29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	GPBP1	Q86WP2	473 aa		29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	TMEM105	Q8N8V8	129 aa		29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	SLC7A14	Q8TBB6	771 aa		29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	REEP2	Q9BRK0	252 aa		29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	NUB1	Q9Y5A7	615 aa		29.11	■■■□□ 2.25
SNF8-208	ENST00000510195	NPHP3-ACAD11	A0A0J9YXS1	232 aa		29.1	■■■□□ 2.25
SNF8-208	ENST00000510195		H7C4K7	107 aa		29.1	■■■□□ 2.25
SNF8-208	ENST00000510195	SRF	P11831	508 aa		29.1	■■■□□ 2.25
SNF8-208	ENST00000510195	HARS	P12081	509 aa	Known RBP	29.1	■■■□□ 2.25
SNF8-208	ENST00000510195	RSPO2	Q6UXX9	243 aa	Predicted RBP	29.1	■■■□□ 2.25
SNF8-208	ENST00000510195	ZNF461	Q8TAF7	563 aa		29.1	■■■□□ 2.25
SNF8-208	ENST00000510195	RSAD2	Q8WXG1	361 aa		29.1	■■■□□ 2.25
SNF8-208	ENST00000510195	TSPAN18	Q96SJ8	248 aa		29.1	■■■□□ 2.25

Retrieved 100 of 20,778 RNA–protein pairs in 39 ms