RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 NOTUMQ6P988 496 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 ALKAL1Q6UXT8 129 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 PPFIBP1Q86W92 1011 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 WDR49Q8IV35 697 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 UBR7Q8N806 425 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 SPDYE1Q8NFV5 336 aaPredicted RBP11.25□□□□□ -0.61
TPM3-217ENST00000504663 NEK11Q8NG66 645 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 SNX27Q96L92 541 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 CHP1Q99653 195 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 SYT11Q9BT88 431 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 MTMR12Q9C0I1 747 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 NLRC4Q9NPP4 1024 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 APEX2Q9UBZ4 518 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 SIX4Q9UIU6 781 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 PLAGL2Q9UPG8 496 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 PIN4Q9Y237 131 aaKnown RBP11.25□□□□□ -0.61
TPM3-217ENST00000504663 LUC7L2Q9Y383 392 aaKnown RBP11.25□□□□□ -0.61
TPM3-217ENST00000504663 LTBP2Q14767 1821 aa11.25□□□□□ -0.61
TPM3-217ENST00000504663 TET1Q8NFU7 2136 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 TSC2P49815 1807 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 PITPNM1O00562 1244 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 IL18RAPO95256 599 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 HLA-DRAP01903 254 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 PLEKP08567 350 aaPredicted RBP11.24□□□□□ -0.61
TPM3-217ENST00000504663 PNMA6AP0CW24 399 aaPredicted RBP11.24□□□□□ -0.61
TPM3-217ENST00000504663 GHRP10912 638 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 SKILP12757 684 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 ATF7P17544 494 aaPredicted RBP11.24□□□□□ -0.61
TPM3-217ENST00000504663 CD52P31358 61 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 MATR3P43243 847 aaKnown RBP eCLIP11.24□□□□□ -0.61
TPM3-217ENST00000504663 CDK17Q00537 523 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 ZBTB6Q15916 424 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 TCTN1Q2MV58 587 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 ASTE1Q2TB18 679 aaPredicted RBP11.24□□□□□ -0.61
TPM3-217ENST00000504663 RSPH3Q86UC2 560 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 GPIHBP1Q8IV16 184 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 CCDC112Q8NEF3 446 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 OR8K1Q8NGG5 319 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 VWCEQ96DN2 955 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 TRIM44Q96DX7 344 aaPredicted RBP11.24□□□□□ -0.61
TPM3-217ENST00000504663 ZMAT2Q96NC0 199 aaKnown RBP11.24□□□□□ -0.61
TPM3-217ENST00000504663 BAG1Q99933 345 aaPredicted RBP11.24□□□□□ -0.61
TPM3-217ENST00000504663 TCHPQ9BT92 498 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 SEZ6LQ9BYH1 1024 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 XYLT2Q9H1B5 865 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 KCND1Q9NSA2 647 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 SNTG2Q9NY99 539 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 ARHGAP20Q9P2F6 1191 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 NENFQ9UMX5 172 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 ST3GAL5Q9UNP4 418 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 REXO2Q9Y3B8 237 aaKnown RBP11.24□□□□□ -0.61
TPM3-217ENST00000504663 HES2Q9Y543 173 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 SQORQ9Y6N5 450 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 UMODL1Q5DID0 1318 aa11.24□□□□□ -0.61
TPM3-217ENST00000504663 SCN1AP35498 2009 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 USP27XA6NNY8 438 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 MEIS3P2A8K0S8 358 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 F8VZ95 297 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 STX10O60499 249 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 RPS6KA5O75582 802 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 RECQL4O94761 1208 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 CST3P01034 146 aaPredicted RBP11.23□□□□□ -0.61
TPM3-217ENST00000504663 GJA8P48165 433 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 GUCY2FP51841 1108 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 PKN2Q16513 984 aaKnown RBP11.23□□□□□ -0.61
TPM3-217ENST00000504663 C1orf53Q5VUE5 145 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 JADE1Q6IE81 842 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 SPOPLQ6IQ16 392 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 TOGARAM2Q6ZUX3 1019 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 ANKRD33Q7Z3H0 272 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 IRF2BP2Q7Z5L9 587 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 C1orf127Q8N9H9 656 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 FBXL13Q8NEE6 735 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 SYN2Q92777 582 aaPredicted RBP11.23□□□□□ -0.61
TPM3-217ENST00000504663 TATDN2Q93075 761 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 PCMTD1Q96MG8 357 aaPredicted RBP11.23□□□□□ -0.61
TPM3-217ENST00000504663 PI4K2AQ9BTU6 479 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 TRAIPQ9BWF2 469 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 ASB7Q9H672 318 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 RPF1Q9H9Y2 349 aaKnown RBP11.23□□□□□ -0.61
TPM3-217ENST00000504663 RAB20Q9NX57 234 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 AIPL1Q9NZN9 384 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 CNTN3Q9P232 1028 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 DNAJC12Q9UKB3 198 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 PADI3Q9ULW8 664 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 MYO6Q9UM54 1294 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 DAAM1Q9Y4D1 1078 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 IPPQ9Y573 584 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 MICAL3Q7RTP6 2002 aa11.23□□□□□ -0.61
TPM3-217ENST00000504663 A0A0U1RQJ8 604 aa11.22□□□□□ -0.61
TPM3-217ENST00000504663 ESPNB1AK53 854 aa11.22□□□□□ -0.61
TPM3-217ENST00000504663 ZNF263O14978 683 aa11.22□□□□□ -0.61
TPM3-217ENST00000504663 ARHGAP6O43182 974 aa11.22□□□□□ -0.61
TPM3-217ENST00000504663 ASS1P00966 412 aaKnown RBP11.22□□□□□ -0.61
TPM3-217ENST00000504663 TNNI1P19237 187 aa11.22□□□□□ -0.61
TPM3-217ENST00000504663 ACO1P21399 889 aaKnown RBP11.22□□□□□ -0.61
TPM3-217ENST00000504663 RFX1P22670 979 aa11.22□□□□□ -0.61
TPM3-217ENST00000504663 PRKCIP41743 596 aa11.22□□□□□ -0.61
TPM3-217ENST00000504663 AP3M2P53677 418 aa11.22□□□□□ -0.61
TPM3-217ENST00000504663 HSP90AA2PQ14568 343 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms