RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 PTPRAP18433 802 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 RRM1P23921 792 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 GBP1P32455 592 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 NLRP11P59045 1033 aaKnown RBP10.54□□□□□ -0.72
CLIP1-204ENST00000501271 PRAMEF18Q5VWM3 479 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 DAB2IPQ5VWQ8 1189 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 TDRD10Q5VZ19 366 aaKnown RBP10.54□□□□□ -0.72
CLIP1-204ENST00000501271 SPOPLQ6IQ16 392 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 ABHD15Q6UXT9 468 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 CYFIP1Q7L576 1253 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 ENOSF1Q7L5Y1 443 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 MCOLN2Q8IZK6 566 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 ZNF280CQ8ND82 737 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 UHMK1Q8TAS1 419 aaKnown RBP10.54□□□□□ -0.72
CLIP1-204ENST00000501271 C1orf54Q8WWF1 131 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 IFT74Q96LB3 600 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 WRNIP1Q96S55 665 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 HAPLN2Q9GZV7 340 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 AZI2Q9H6S1 392 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 LRRC19Q9H756 370 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 CYP39A1Q9NYL5 469 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 PIM2Q9P1W9 311 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 PARP2Q9UGN5 583 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 TLDC2A0PJX2 215 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 NFKBIEO00221 500 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 FSCN2O14926 492 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 RIPK2O43353 540 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 EXTL3O43909 919 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 DKC1O60832 514 aaKnown RBP eCLIP10.54□□□□□ -0.72
CLIP1-204ENST00000501271 ECEL1O95672 775 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 SCP2P22307 547 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 DSG3P32926 999 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 ACOT2P49753 483 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 GMPSP49915 693 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-204ENST00000501271 LIG4P49917 911 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 CLDN10P78369 228 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 BYSLQ13895 437 aaKnown RBP10.54□□□□□ -0.72
CLIP1-204ENST00000501271 EMC2Q15006 297 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 C6orf89Q6UWU4 347 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 MICALCLQ6ZW33 695 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 OTUD6BQ8N6M0 293 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 EPS8L3Q8TE67 593 aaKnown RBP10.54□□□□□ -0.72
CLIP1-204ENST00000501271 PGM2Q96G03 612 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 RUNDC3BQ96NL0 473 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 ADAM7Q9H2U9 754 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 CHST7Q9NS84 486 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 DDX20Q9UHI6 824 aaKnown RBP10.54□□□□□ -0.72
CLIP1-204ENST00000501271 ADAMTS5Q9UNA0 930 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 HLA-DRAP01903 254 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 CFHP08603 1231 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 ATP4AP20648 1035 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 OAZ1P54368 228 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 IFI35P80217 286 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-204ENST00000501271 SP2Q02086 613 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 KRT17Q04695 432 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 ENPEPQ07075 957 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 IFT88Q13099 833 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 SNX1Q13596 522 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 PSMD6Q15008 389 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 PPP1R7Q15435 360 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 ZACNQ401N2 412 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 SGO2Q562F6 1265 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 CHADLQ6NUI6 762 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 YTHDF3Q7Z739 585 aaKnown RBP10.53□□□□□ -0.72
CLIP1-204ENST00000501271 ATG4AQ8WYN0 398 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 TMEM143Q96AN5 459 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 CNOT10Q9H9A5 744 aaKnown RBP10.53□□□□□ -0.72
CLIP1-204ENST00000501271 AVENQ9NQS1 362 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-204ENST00000501271 WDR90Q96KV7 1748 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 C5orf60A6NFR6 353 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 SPATA31C2B4DYI2 1134 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 O00370 1275 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 VNN1O95497 513 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 C4BPAP04003 597 aaKnown RBP10.53□□□□□ -0.72
CLIP1-204ENST00000501271 SUPT20HL2P0C7V6 817 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 RARGP13631 454 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 TNNI1P19237 187 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 RPS12P25398 132 aaKnown RBP10.53□□□□□ -0.72
CLIP1-204ENST00000501271 PIK3CAP42336 1068 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 SLCO1A2P46721 670 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 CENPCQ03188 943 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 SUPT20HL1Q3ZLR7 823 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 ZBTB41Q5SVQ8 909 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 CRELD2Q6UXH1 353 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-204ENST00000501271 C3orf20Q8ND61 904 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 ASAP3Q8TDY4 903 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 SLCO2A1Q92959 643 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 ZBTB45Q96K62 511 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-204ENST00000501271 FNBP1Q96RU3 617 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 AS3MTQ9HBK9 375 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 AAASQ9NRG9 546 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 CNOT7Q9UIV1 285 aaKnown RBP10.53□□□□□ -0.72
CLIP1-204ENST00000501271 ZNF112Q9UJU3 913 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 GGA2Q9UJY4 613 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 AGO2Q9UKV8 859 aaKnown RBP10.53□□□□□ -0.72
CLIP1-204ENST00000501271 PCDHB2Q9Y5E7 798 aa10.53□□□□□ -0.72
CLIP1-204ENST00000501271 ZNF541Q9H0D2 1346 aa10.52□□□□□ -0.72
CLIP1-204ENST00000501271 RGS16O15492 202 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-204ENST00000501271 CYP1A1P04798 512 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-204ENST00000501271 EDN1P05305 212 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms