RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZNF662Q6ZS27 426 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 PXYLP1Q8TE99 480 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 ZNF653Q96CK0 615 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 PBKQ96KB5 322 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 RUNDC3BQ96NL0 473 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 PCYT2Q99447 389 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 FERMT1Q9BQL6 677 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 TSEN34Q9BSV6 310 aaKnown RBP8.97□□□□□ -0.97
USP54-215ENST00000497106 DDX20Q9UHI6 824 aaKnown RBP8.97□□□□□ -0.97
USP54-215ENST00000497106 NUB1Q9Y5A7 615 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 LOXHD1Q8IVV2 1947 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 EVI5O60447 810 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 TBC1D8O95759 1140 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 GPC5P78333 572 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 KCNA1Q09470 495 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 PRAMEF19Q5SWL8 479 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 RPUSD2Q8IZ73 545 aaKnown RBP8.97□□□□□ -0.97
USP54-215ENST00000497106 TRAPPC12Q8WVT3 735 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 RUFY1Q96T51 708 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 FGFBP2Q9BYJ0 223 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 PDLIM7Q9NR12 457 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 NXF1Q9UBU9 619 aaKnown RBP8.97□□□□□ -0.97
USP54-215ENST00000497106 CDC23Q9UJX2 597 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 MROH7Q68CQ1 1323 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 IGKV6-21A0A0C4DH24 114 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 CARNS1A5YM72 827 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 MIF4GDA9UHW6 222 aaKnown RBP8.97□□□□□ -0.97
USP54-215ENST00000497106 HUS1O60921 280 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 HSPA6P17066 643 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 GNA15P30679 374 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 SV2AQ7L0J3 742 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 FZD8Q9H461 694 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 C2CD2Q9Y426 696 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 STYXL1Q9Y6J8 313 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 RBBP6Q7Z6E9 1792 aaKnown RBP8.97□□□□□ -0.97
USP54-215ENST00000497106 LOC285556D6RIA3 1793 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 F8VZ95 297 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 GPR25O00155 361 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 HOXA2O43364 376 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 ACTN1P12814 892 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 EIF4BP23588 611 aaKnown RBP8.97□□□□□ -0.97
USP54-215ENST00000497106 GRM5P41594 1212 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 PRKCZQ05513 592 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 KIZQ2M2Z5 673 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 SLC35F6Q8N357 371 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 RFFLQ8WZ73 363 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 STRA6Q9BX79 667 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 GANQ9H2C0 597 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 TRIM17Q9Y577 477 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 ZNF865P0CJ78 1059 aaPredicted RBP8.96□□□□□ -0.97
USP54-215ENST00000497106 KLK7P49862 253 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 TMEM270Q6UE05 265 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 RAD9BQ6WBX8 426 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 APTXQ7Z2E3 356 aaKnown RBP8.96□□□□□ -0.97
USP54-215ENST00000497106 DAAM2Q86T65 1068 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 IFNLR1Q8IU57 520 aaPredicted RBP8.96□□□□□ -0.97
USP54-215ENST00000497106 CD99L2Q8TCZ2 262 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 DNAJB3Q8WWF6 145 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 FBXL18Q96ME1 805 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 MED15Q96RN5 788 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 CELF4Q9BZC1 486 aaKnown RBP8.96□□□□□ -0.97
USP54-215ENST00000497106 RNPEPQ9H4A4 650 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 TMEM253P0C7T8 217 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 GZMAP12544 262 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 FECHP22830 423 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 BEX3Q00994 111 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 TRAPPC11Q7Z392 1133 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 WDR35Q9P2L0 1181 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 UVRAGQ9P2Y5 699 aa8.96□□□□□ -0.97
USP54-215ENST00000497106 A0A0A6YYK5 440 aaPredicted RBP8.96□□□□□ -0.98
USP54-215ENST00000497106 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.96□□□□□ -0.98
USP54-215ENST00000497106 PARNO95453 639 aaKnown RBP8.96□□□□□ -0.98
USP54-215ENST00000497106 ADRB2P07550 413 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 ABCB4P21439 1286 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 GRK4P32298 578 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 MBTD1Q05BQ5 628 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 HADHQ16836 314 aaKnown RBP8.96□□□□□ -0.98
USP54-215ENST00000497106 TMCO3Q6UWJ1 677 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 CCDC26Q8TAB7 109 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 TNIP3Q96KP6 325 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 ZNF518BQ9C0D4 1074 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 CDT1Q9H211 546 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 AGAP1Q9UPQ3 857 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 B4GALT4O60513 344 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 DARSP14868 501 aaKnown RBP8.96□□□□□ -0.98
USP54-215ENST00000497106 THPOP40225 353 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 EPC2Q52LR7 807 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 THEM5Q8N1Q8 247 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 RNF169Q8NCN4 708 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 OSMRQ99650 979 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 DPP3Q9NY33 737 aa8.96□□□□□ -0.98
USP54-215ENST00000497106 TMEM110-MUSTN1A8MSY1 372 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 KIF3CO14782 793 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 GFPT1Q06210 699 aaPredicted RBP8.95□□□□□ -0.98
USP54-215ENST00000497106 PTGISQ16647 500 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 GJC2Q5T442 439 aaPredicted RBP8.95□□□□□ -0.98
USP54-215ENST00000497106 DPH6Q7L8W6 267 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 SESTD1Q86VW0 696 aa8.95□□□□□ -0.98
USP54-215ENST00000497106 RBBP8NLQ8NC74 664 aaPredicted RBP8.95□□□□□ -0.98
USP54-215ENST00000497106 ZNF668Q96K58 619 aaPredicted RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms