RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 NCK2O43639 380 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 ASMTLO95671 621 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 NR1H3Q13133 447 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 LAMC2Q13753 1193 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 CAPRIN1Q14444 709 aaKnown RBP13.87□□□□□ -0.19
PTPRF-215ENST00000496447 ASAP3Q8TDY4 903 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 MED15Q96RN5 788 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 PCDHB7Q9Y5E2 793 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 RRN3P2A6NIE6 340 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 IL18RAPO95256 599 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 KCNA4P22459 653 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 PDIA2Q13087 525 aaKnown RBP13.87□□□□□ -0.19
PTPRF-215ENST00000496447 ZNF467Q7Z7K2 595 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-215ENST00000496447 LRRC71Q8N4P6 559 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 RAB42Q8N4Z0 105 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 GPR75-ASB3A0A0A6YYF3 556 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 CORO7P57737 925 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 SMAD1Q15797 465 aaKnown RBP13.87□□□□□ -0.19
PTPRF-215ENST00000496447 SNRNP35Q16560 246 aaKnown RBP13.87□□□□□ -0.19
PTPRF-215ENST00000496447 SV2CQ496J9 727 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 STKLD1Q8NE28 680 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 HPS3Q969F9 1004 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.87□□□□□ -0.191e-7■■■■□ 22.3
PTPRF-215ENST00000496447 TRIM55Q9BYV6 548 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 PCDHB8Q9UN66 801 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 APOBEC2Q9Y235 224 aaKnown RBP13.87□□□□□ -0.19
PTPRF-215ENST00000496447 ITM2BQ9Y287 266 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 CEP152O94986 1710 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 TECPR2O15040 1411 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 PTPRUQ92729 1446 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 MAPK13O15264 365 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 RTN2O75298 545 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 RGS2P41220 211 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 ARHGDIAP52565 204 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 KCNA1Q09470 495 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 MGAT5BQ3V5L5 792 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 JMJD4Q9H9V9 463 aa13.87□□□□□ -0.19
PTPRF-215ENST00000496447 TEX33O43247 280 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 SCP2P22307 547 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 ANO4Q32M45 955 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 XRRA1Q6P2D8 792 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 DEFB132Q7Z7B7 95 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 ZBED8Q8IZ13 594 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 PITPNM3Q9BZ71 974 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 XAB2Q9HCS7 855 aaKnown RBP13.86□□□□□ -0.19
PTPRF-215ENST00000496447 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.86□□□□□ -0.19
PTPRF-215ENST00000496447 TMEM51Q9NW97 253 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 FAM205CA6NFA0 338 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 SLC26A4O43511 780 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 ATP5HO75947 161 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 CHGBP05060 677 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 SLC20A2Q08357 652 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 C9orf131Q5VYM1 1079 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 NFRKBQ6P4R8 1299 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 TRMT10CQ7L0Y3 403 aaKnown RBP13.86□□□□□ -0.19
PTPRF-215ENST00000496447 KDELC2Q7Z4H8 507 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 ZKSCAN4Q969J2 545 aaPredicted RBP13.86□□□□□ -0.19
PTPRF-215ENST00000496447 OLFM3Q96PB7 478 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 PRMT7Q9NVM4 692 aaPredicted RBP13.86□□□□□ -0.19
PTPRF-215ENST00000496447 PPARGC1AQ9UBK2 798 aaKnown RBP13.86□□□□□ -0.19
PTPRF-215ENST00000496447 L3MBTL1Q9Y468 752 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 ATP9BO43861 1147 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 IRF1P10914 325 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 A0A1W2PQC6 194 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 GTF2H3Q13889 308 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 FSCBQ5H9T9 825 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 EPM2AIP1Q7L775 607 aaPredicted RBP13.86□□□□□ -0.19
PTPRF-215ENST00000496447 ZC3H15Q8WU90 426 aaKnown RBP13.86□□□□□ -0.19
PTPRF-215ENST00000496447 SNF8Q96H20 258 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 RIT2Q99578 217 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 SH3BP1Q9Y3L3 701 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 ABCA6Q8N139 1617 aa13.86□□□□□ -0.19
PTPRF-215ENST00000496447 MEFVO15553 781 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-215ENST00000496447 MYO1DO94832 1006 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 ATICP31939 592 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 GGCXP38435 758 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 RNF135Q8IUD6 432 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 WDR35Q9P2L0 1181 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 APEX2Q9UBZ4 518 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 C17orf102A2RUQ5 167 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 LCA5Q86VQ0 697 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 C1orf54Q8WWF1 131 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 GFM2Q969S9 779 aaKnown RBP13.85□□□□□ -0.19
PTPRF-215ENST00000496447 FAM96AQ9H5X1 160 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 SYNDIG1Q9H7V2 258 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 EPB41L4AQ9HCS5 686 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-215ENST00000496447 PAIP2BQ9ULR5 123 aaKnown RBP13.85□□□□□ -0.19
PTPRF-215ENST00000496447 SLC4A7Q9Y6M7 1214 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 GRID2IPA4D2P6 1211 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 PDGFRAP16234 1089 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 PCSK1P29120 753 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 SLC1A1P43005 524 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 PMS2P54278 862 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 EIF3EP60228 445 aaKnown RBP13.85□□□□□ -0.19
PTPRF-215ENST00000496447 HDLBPQ00341 1268 aaKnown RBP13.85□□□□□ -0.19
PTPRF-215ENST00000496447 CUL3Q13618 768 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 RBBP7Q16576 425 aa13.85□□□□□ -0.19
PTPRF-215ENST00000496447 SYT2Q8N9I0 419 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-215ENST00000496447 DDX47Q9H0S4 455 aaKnown RBP13.85□□□□□ -0.19
PTPRF-215ENST00000496447 TRIM45Q9H8W5 580 aaPredicted RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms