RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 ZC2HC1CQ53FD0 456 aaPredicted RBP11.62□□□□□ -0.55
NELFE-213ENST00000494956 XKR4Q5GH76 650 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 ATAT1Q5SQI0 421 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 RSPO2Q6UXX9 243 aaPredicted RBP11.62□□□□□ -0.55
NELFE-213ENST00000494956 LNX1Q8TBB1 728 aaPredicted RBP11.62□□□□□ -0.55
NELFE-213ENST00000494956 EDAQ92838 391 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 BICD1Q96G01 975 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 RIPOR3Q96MK2 946 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 ACAP3Q96P50 834 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 FIZ1Q96SL8 496 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 CLSTN3Q9BQT9 956 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 TTPALQ9BTX7 342 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 CCSER1Q9C0I3 900 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 TFIP11Q9UBB9 837 aaKnown RBP11.62□□□□□ -0.55
NELFE-213ENST00000494956 LIMD1Q9UGP4 676 aa11.62□□□□□ -0.55
NELFE-213ENST00000494956 N4BP1O75113 896 aaKnown RBP11.61□□□□□ -0.55
NELFE-213ENST00000494956 TOM1L1O75674 476 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 BRD1O95696 1058 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 PDGFBP01127 241 aaPredicted RBP11.61□□□□□ -0.55
NELFE-213ENST00000494956 DDIT3P35638 169 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 GUCY2FP51841 1108 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 ZNF131P52739 623 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 SMTNP53814 917 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 SLC39A4Q6P5W5 647 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 LILRA6Q6PI73 481 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 TRIM67Q6ZTA4 783 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 ZNF707Q96C28 371 aaPredicted RBP11.61□□□□□ -0.55
NELFE-213ENST00000494956 NECTIN4Q96NY8 510 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 KCND2Q9NZV8 630 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 TBC1D7Q9P0N9 293 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 LARSQ9P2J5 1176 aaKnown RBP11.61□□□□□ -0.55
NELFE-213ENST00000494956 STK39Q9UEW8 545 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 TUBGCP4Q9UGJ1 667 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 ODF2LQ9ULJ1 636 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 SSX2IPQ9Y2D8 614 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 SRPRBQ9Y5M8 271 aaKnown RBP11.61□□□□□ -0.55
NELFE-213ENST00000494956 DOCK8Q8NF50 2099 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 TRIOO75962 3097 aa11.61□□□□□ -0.55
NELFE-213ENST00000494956 TMEM221A6NGB7 291 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 MYMKA6NI61 221 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 ANKRD63C9JTQ0 380 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 M0R296 226 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 PODXLO00592 558 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 TRAK2O60296 914 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 FGFR3P22607 806 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 LIG4P49917 911 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 NTHL1P78549 312 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 MCL1Q07820 350 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 PKP1Q13835 747 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 SLC39A14Q15043 492 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 PTPN21Q16825 1174 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 DCLRE1AQ6PJP8 1040 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 APBB1IPQ7Z5R6 666 aaPredicted RBP11.6□□□□□ -0.55
NELFE-213ENST00000494956 SFR1Q86XK3 245 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 KCTD17Q8N5Z5 321 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 PDILTQ8N807 584 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 TDRD5Q8NAT2 981 aaKnown RBP11.6□□□□□ -0.55
NELFE-213ENST00000494956 KREMEN2Q8NCW0 462 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 PIK3R5Q8WYR1 880 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 SMG7Q92540 1137 aaKnown RBP11.6□□□□□ -0.55
NELFE-213ENST00000494956 STAMQ92783 540 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 SNX21Q969T3 373 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 DDX27Q96GQ7 796 aaKnown RBP11.6□□□□□ -0.55
NELFE-213ENST00000494956 FGFBP2Q9BYJ0 223 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 PARVGQ9HBI0 331 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 TOPORSQ9NS56 1045 aaPredicted RBP11.6□□□□□ -0.55
NELFE-213ENST00000494956 CNTN3Q9P232 1028 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 FNIP2Q9P278 1114 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 TBX20Q9UMR3 447 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 NR2E1Q9Y466 385 aa11.6□□□□□ -0.55
NELFE-213ENST00000494956 LACTBL1A8MY62 500 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 HNRNPDLO14979 420 aaKnown RBP11.59□□□□□ -0.55
NELFE-213ENST00000494956 CLDN3O15551 220 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 SLC26A4O43511 780 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 TBCAO75347 108 aaKnown RBP11.59□□□□□ -0.55
NELFE-213ENST00000494956 KCNE1P15382 129 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 OR1D2P34982 312 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 KCNA1Q09470 495 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 RRAGBQ5VZM2 374 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 ZPBP2Q6X784 338 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 CCDC149Q6ZUS6 474 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 DDX12PQ92771 950 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 ASIC4Q96FT7 647 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 MYADMQ96S97 322 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.59□□□□□ -0.55
NELFE-213ENST00000494956 CCDC39Q9UFE4 941 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 FBXW11Q9UKB1 542 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 CDY1Q9Y6F8 540 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 KMT2EQ8IZD2 1858 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 NOTCH4Q99466 2003 aa11.59□□□□□ -0.55
NELFE-213ENST00000494956 TTC26A0AVF1 554 aa11.58□□□□□ -0.56
NELFE-213ENST00000494956 TMEM189-UBE2V1I3L0A0 370 aa11.58□□□□□ -0.56
NELFE-213ENST00000494956 PPEF2O14830 753 aa11.58□□□□□ -0.56
NELFE-213ENST00000494956 CCL16O15467 120 aa11.58□□□□□ -0.56
NELFE-213ENST00000494956 FAM189A1O60320 539 aa11.58□□□□□ -0.56
NELFE-213ENST00000494956 ZMYND10O75800 440 aa11.58□□□□□ -0.56
NELFE-213ENST00000494956 NASPP49321 788 aaPredicted RBP11.58□□□□□ -0.56
NELFE-213ENST00000494956 ARPP19P56211 112 aa11.58□□□□□ -0.56
NELFE-213ENST00000494956 SIGLEC14Q08ET2 396 aa11.58□□□□□ -0.56
NELFE-213ENST00000494956 ELAVL2Q12926 359 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms