RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 CTNND2Q9UQB3 1225 aa6.15□□□□□ -1.42
PTCD3-219ENST00000494323 TMX2Q9Y320 296 aa6.15□□□□□ -1.42
PTCD3-219ENST00000494323 VCANP13611 3396 aa6.15□□□□□ -1.43
PTCD3-219ENST00000494323 BLACEA4D250 179 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 FITM1A5D6W6 292 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 GRXCR1A8MXD5 290 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 CCER2I3L3R5 266 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 VWA5AO00534 786 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 AQP7O14520 342 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 MBD4O95243 580 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 SLC25A27O95847 323 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 APPP05067 770 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 CLTBP09497 229 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 IFIT2P09913 472 aaKnown RBP6.14□□□□□ -1.43
PTCD3-219ENST00000494323 NAT1P18440 290 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 AFMP43652 599 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 CDKN1CP49918 316 aaPredicted RBP6.14□□□□□ -1.43
PTCD3-219ENST00000494323 HK2P52789 917 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 KCTD2Q14681 263 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 KCNA10Q16322 511 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 KCNMB1Q16558 191 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 FAM83BQ5T0W9 1011 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 C12orf60Q5U649 245 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 CEP128Q6ZU80 1094 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 BRAPQ7Z569 592 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 SLCO6A1Q86UG4 719 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 ERC1Q8IUD2 1116 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 CCDC103Q8IW40 242 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 ABRAQ8N0Z2 381 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 CLASRPQ8N2M8 674 aaKnown RBP6.14□□□□□ -1.43
PTCD3-219ENST00000494323 NUP88Q99567 741 aaPredicted RBP6.14□□□□□ -1.43
PTCD3-219ENST00000494323 PHF20Q9BVI0 1012 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 INTS7Q9NVH2 962 aaKnown RBP6.14□□□□□ -1.43
PTCD3-219ENST00000494323 DDX56Q9NY93 547 aaKnown RBP6.14□□□□□ -1.43
PTCD3-219ENST00000494323 KLHL42Q9P2K6 505 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 SWAP70Q9UH65 585 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 EBF1Q9UH73 591 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 TMEFF2Q9UIK5 374 aaPredicted RBP6.14□□□□□ -1.43
PTCD3-219ENST00000494323 ADAMTS5Q9UNA0 930 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 RIPK3Q9Y572 518 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 BAZ2AQ9UIF9 1905 aaKnown RBP6.14□□□□□ -1.43
PTCD3-219ENST00000494323 EYSQ5T1H1 3165 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 NCOR1O75376 2440 aa6.14□□□□□ -1.43
PTCD3-219ENST00000494323 MAST2Q6P0Q8 1798 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-219ENST00000494323 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-219ENST00000494323 KIAA0355O15063 1070 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 WDR46O15213 610 aaKnown RBP6.13□□□□□ -1.43
PTCD3-219ENST00000494323 NPHS1O60500 1241 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 SNAI1O95863 264 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-219ENST00000494323 RAC2P15153 192 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 ACLYP53396 1101 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 GPR85P60893 370 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 FPGSQ05932 587 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 NR0B2Q15466 257 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 SLC14A2Q15849 920 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 PLEKHG6Q3KR16 790 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 ZNF648Q5T619 568 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-219ENST00000494323 GALNT18Q6P9A2 607 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 CTR9Q6PD62 1173 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 TMED8Q6PL24 325 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-219ENST00000494323 C16orf59Q7L2K0 433 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 FGD2Q7Z6J4 655 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 CPNE8Q86YQ8 564 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 RIOX2Q8IUF8 465 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 SIRT2Q8IXJ6 389 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 IFNL3Q8IZI9 196 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 CPXCR1Q8N123 301 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 AFAP1L2Q8N4X5 818 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.13□□□□□ -1.431e-15■■□□□ 12.9
PTCD3-219ENST00000494323 CHAC2Q8WUX2 184 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 CHMP4CQ96CF2 233 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 DDX11Q96FC9 970 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 SCLYQ96I15 445 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 CCDC17Q96LX7 622 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 PUS7LQ9H0K6 701 aaKnown RBP6.13□□□□□ -1.43
PTCD3-219ENST00000494323 CAAP1Q9H8G2 361 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 STARD7Q9NQZ5 370 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 ATP8A2Q9NTI2 1148 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 PAG1Q9NWQ8 432 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 MAGEC2Q9UBF1 373 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-219ENST00000494323 NDOR1Q9UHB4 597 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 CNPY2Q9Y2B0 182 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 SLC4A4Q9Y6R1 1079 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 COL11A1P12107 1806 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-219ENST00000494323 LTBP2Q14767 1821 aa6.13□□□□□ -1.43
PTCD3-219ENST00000494323 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-219ENST00000494323 C7orf72A4D263 438 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 MYADML2A6NDP7 307 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 F5H6K3 240 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 ARNTLO00327 626 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 TIMP1P01033 207 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 HPXP02790 462 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 AKR1A1P14550 325 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 ADD2P35612 726 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 CORO7P57737 925 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 KLRC3Q07444 240 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 INF2Q27J81 1249 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 HSP90AB4PQ58FF6 505 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 SNRNP48Q6IEG0 339 aaKnown RBP6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms