RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 DCXO43602 365 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 URODP06132 367 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 SPATA31D3P0C874 917 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 HARSP12081 509 aaKnown RBP11.7□□□□□ -0.54
COL6A3-214ENST00000493608 ALADP13716 330 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 PLS3P13797 630 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 HOXB8P17481 243 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-214ENST00000493608 PLCG1P19174 1290 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 GUCY2CP25092 1073 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 LONP1P36776 959 aaKnown RBP11.7□□□□□ -0.54
COL6A3-214ENST00000493608 SLC19A1P41440 591 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 GLUD2P49448 558 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 HSP90AA2PQ14568 343 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-214ENST00000493608 DCAF4L1Q3SXM0 396 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 ZNF568Q3ZCX4 644 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 TPRNQ4KMQ1 711 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 TMEM31Q5JXX7 168 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 KIAA0319Q5VV43 1072 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 FUT10Q6P4F1 479 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 TMC5Q6UXY8 1006 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 SPATA31D4Q6ZUB0 917 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 USP49Q70CQ1 688 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 GPBP1Q86WP2 473 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 RASSF8Q8NHQ8 419 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 THAP11Q96EK4 314 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 EPSTI1Q96J88 318 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 CLIC6Q96NY7 704 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 TCHPQ9BT92 498 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 HERC2P3Q9BVR0 1158 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 EMILIN2Q9BXX0 1053 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 MRPL4Q9BYD3 311 aaKnown RBP11.7□□□□□ -0.54
COL6A3-214ENST00000493608 CDT1Q9H211 546 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 ADAM7Q9H2U9 754 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 BLOC1S4Q9NUP1 217 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 ADAM28Q9UKQ2 775 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 MTMR6Q9Y217 621 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 TNFSF13BQ9Y275 285 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 RBM19Q9Y4C8 960 aaKnown RBP11.7□□□□□ -0.54
COL6A3-214ENST00000493608 C2orf16Q68DN1 1984 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 MTCL1Q9Y4B5 1905 aaKnown RBP11.7□□□□□ -0.54
COL6A3-214ENST00000493608 PHLPP2Q6ZVD8 1323 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 TEX28O15482 410 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 GPR37L1O60883 481 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 EFEMP2O95967 443 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 BMP15O95972 392 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 RPL17P18621 184 aaKnown RBP11.69□□□□□ -0.54
COL6A3-214ENST00000493608 CLCN4P51793 760 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 TUSC3Q13454 348 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 PTPAQ15257 358 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 NAB2Q15742 525 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 SEZ6Q53EL9 994 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 FOXD4L5Q5VV16 416 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-214ENST00000493608 CES5AQ6NT32 575 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 TRIM67Q6ZTA4 783 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 CEP57Q86XR8 500 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 PALB2Q86YC2 1186 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 RNF168Q8IYW5 571 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-214ENST00000493608 TMEM161BQ8NDZ6 487 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 FOXD4L4Q8WXT5 416 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-214ENST00000493608 RIN2Q8WYP3 895 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-214ENST00000493608 INTS4Q96HW7 963 aaKnown RBP11.69□□□□□ -0.54
COL6A3-214ENST00000493608 FBXL18Q96ME1 805 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 REEP2Q9BRK0 252 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 NTPCRQ9BSD7 190 aaKnown RBP11.69□□□□□ -0.54
COL6A3-214ENST00000493608 TIPINQ9BVW5 301 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 SLC6A16Q9GZN6 736 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 ZHX3Q9H4I2 956 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 POMKQ9H5K3 350 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 C17orf75Q9HAS0 396 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 GOLGA2P5Q9HBQ8 144 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 PTPRHQ9HD43 1115 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 CHST7Q9NS84 486 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 DOCK6Q96HP0 2047 aa11.69□□□□□ -0.54
COL6A3-214ENST00000493608 VWA8A3KMH1 1905 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 STX6O43752 255 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 KIF4AO95239 1232 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 MAPTP10636 758 aaKnown RBP11.68□□□□□ -0.54
COL6A3-214ENST00000493608 MATR3P43243 847 aaKnown RBP eCLIP11.68□□□□□ -0.54
COL6A3-214ENST00000493608 SMTNP53814 917 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 DSG1Q02413 1049 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 ITIH3Q06033 890 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 STRN3Q13033 797 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 USP41Q3LFD5 358 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 PRSS55Q6UWB4 352 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-214ENST00000493608 LIAT1Q6ZQX7 453 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 PPFIBP1Q86W92 1011 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 MYCT1Q8N699 235 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 SPIRE2Q8WWL2 714 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 RAD54LQ92698 747 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 SPSB2Q99619 263 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 CCDC94Q9BW85 323 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-214ENST00000493608 PANK2Q9BZ23 570 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 DZANK1Q9NVP4 752 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 ANKFY1Q9P2R3 1169 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 STK39Q9UEW8 545 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 FBXO2Q9UK22 296 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-214ENST00000493608 SSX2IPQ9Y2D8 614 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 TRIOO75962 3097 aa11.68□□□□□ -0.54
COL6A3-214ENST00000493608 SMIM28A0A1B0GU29 152 aa11.67□□□□□ -0.54
COL6A3-214ENST00000493608 ABLIM1O14639 778 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms