RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 ANKRD36BP1Q96IX9 119 aa23.37■■□□□ 1.33
SMC4-221ENST00000489573 GPR182O15218 404 aa23.36■■□□□ 1.33
SMC4-221ENST00000489573 VNN1O95497 513 aa23.36■■□□□ 1.33
SMC4-221ENST00000489573 TNNC2P02585 160 aa23.36■■□□□ 1.33
SMC4-221ENST00000489573 CDK7P50613 346 aa23.36■■□□□ 1.33
SMC4-221ENST00000489573 CD302Q8IX05 232 aa23.36■■□□□ 1.33
SMC4-221ENST00000489573 ARMC5Q96C12 935 aa23.36■■□□□ 1.33
SMC4-221ENST00000489573 CRISPLD2Q9H0B8 497 aa23.36■■□□□ 1.33
SMC4-221ENST00000489573 UBE2TQ9NPD8 197 aaPredicted RBP23.36■■□□□ 1.33
SMC4-221ENST00000489573 SNTG2Q9NY99 539 aa23.36■■□□□ 1.33
SMC4-221ENST00000489573 F8VZ95 297 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 NFICP08651 508 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 STAT1P42224 750 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 YARSP54577 528 aaKnown RBP23.35■■□□□ 1.33
SMC4-221ENST00000489573 NFX1Q12986 1120 aaKnown RBP23.35■■□□□ 1.33
SMC4-221ENST00000489573 DRAP1Q14919 205 aaPredicted RBP23.35■■□□□ 1.33
SMC4-221ENST00000489573 WDR44Q5JSH3 913 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 ZNF618Q5T7W0 954 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 TWF2Q6IBS0 349 aaKnown RBP23.35■■□□□ 1.33
SMC4-221ENST00000489573 JADE1Q6IE81 842 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 TRAPPC11Q7Z392 1133 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 NXF3Q9H4D5 531 aaKnown RBP23.35■■□□□ 1.33
SMC4-221ENST00000489573 PLEKHA5Q9HAU0 1116 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 ERVK-5Q9HDB9 667 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.35■■□□□ 1.332e-6■■■■■ 539.2
SMC4-221ENST00000489573 CHST12Q9NRB3 414 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 KCND1Q9NSA2 647 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 C1orf112Q9NSG2 853 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 ANK1P16157 1881 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 SERPING1P05155 500 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 GHRP10912 638 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 CKBP12277 381 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 NCOA4Q13772 614 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 TOGARAM2Q6ZUX3 1019 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 GPIHBP1Q8IV16 184 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 FMNL3Q8IVF7 1028 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 PPM1KQ8N3J5 372 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 U2AF1L4Q8WU68 220 aaKnown RBP23.35■■□□□ 1.33
SMC4-221ENST00000489573 PI4K2AQ9BTU6 479 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 AGO3Q9H9G7 860 aaKnown RBP23.35■■□□□ 1.33
SMC4-221ENST00000489573 NHEJ1Q9H9Q4 299 aaPredicted RBP23.35■■□□□ 1.33
SMC4-221ENST00000489573 ARHGAP20Q9P2F6 1191 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 SQORQ9Y6N5 450 aa23.35■■□□□ 1.33
SMC4-221ENST00000489573 SGPL1O95470 568 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 CYLC1P35663 651 aaPredicted RBP23.34■■□□□ 1.33
SMC4-221ENST00000489573 SOX5P35711 763 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 PAK2Q13177 524 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 LPIN1Q14693 890 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 ARHGAP44Q17R89 818 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 HGSNATQ68CP4 663 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 NT5DC4Q86YG4 428 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 FAM126BQ8IXS8 530 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 CCDC170Q8IYT3 715 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 CCAR2Q8N163 923 aaKnown RBP23.34■■□□□ 1.33
SMC4-221ENST00000489573 USP38Q8NB14 1042 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 HELQQ8TDG4 1101 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 SNX27Q96L92 541 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 FAM81BQ96LP2 452 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 GPR88Q9GZN0 384 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 C2CD2Q9Y426 696 aa23.34■■□□□ 1.33
SMC4-221ENST00000489573 CCP110O43303 1012 aa23.33■■□□□ 1.33
SMC4-221ENST00000489573 TFRCP02786 760 aaKnown RBP23.33■■□□□ 1.33
SMC4-221ENST00000489573 FERP16591 822 aa23.33■■□□□ 1.33
SMC4-221ENST00000489573 CD52P31358 61 aa23.33■■□□□ 1.33
SMC4-221ENST00000489573 MFAP3P55082 362 aa23.33■■□□□ 1.33
SMC4-221ENST00000489573 TMEM132DQ14C87 1099 aa23.33■■□□□ 1.33
SMC4-221ENST00000489573 TDRD12Q587J7 1177 aaKnown RBP23.33■■□□□ 1.33
SMC4-221ENST00000489573 CAGE1Q8TC20 777 aa23.33■■□□□ 1.33
SMC4-221ENST00000489573 IMPG2Q9BZV3 1241 aa23.33■■□□□ 1.33
SMC4-221ENST00000489573 SPTLC3Q9NUV7 552 aa23.33■■□□□ 1.33
SMC4-221ENST00000489573 HES2Q9Y543 173 aa23.33■■□□□ 1.33
SMC4-221ENST00000489573 CENPFP49454 3210 aa23.33■■□□□ 1.32
SMC4-221ENST00000489573 SSU72P8A0A1W2PR75 194 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 RECQL4O94761 1208 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 NDUFA10O95299 355 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 PLEKP08567 350 aaPredicted RBP23.32■■□□□ 1.32
SMC4-221ENST00000489573 GCNT1Q02742 428 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 ARID5AQ03989 594 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 KLHL30Q0D2K2 578 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 MAPK8IP2Q13387 824 aaPredicted RBP23.32■■□□□ 1.32
SMC4-221ENST00000489573 TRPC3Q13507 836 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 TRAF7Q6Q0C0 670 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 ENOSF1Q7L5Y1 443 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 KAT5Q92993 513 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 TATDN2Q93075 761 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 CCDC42Q96M95 316 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 KREMEN1Q96MU8 473 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 DESI2Q9BSY9 194 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 APOL6Q9BWW8 343 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 PADI3Q9ULW8 664 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 PPP2R2CQ9Y2T4 447 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 DERAQ9Y315 318 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 IPPQ9Y573 584 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 EPN1Q9Y6I3 576 aaPredicted RBP23.32■■□□□ 1.32
SMC4-221ENST00000489573 RALGAPA2Q2PPJ7 1873 aa23.32■■□□□ 1.32
SMC4-221ENST00000489573 ZSCAN12O43309 604 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 GFPT2O94808 682 aa23.31■■□□□ 1.32
SMC4-221ENST00000489573 PNMA6AP0CW24 399 aaPredicted RBP23.31■■□□□ 1.32
SMC4-221ENST00000489573 EIF4A3P38919 411 aaKnown RBP23.31■■□□□ 1.32
SMC4-221ENST00000489573 NOP14P78316 857 aaKnown RBP23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms