RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 ZPBP2Q6X784 338 aa25.18■■□□□ 1.62
COL9A3-213ENST00000489045 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.18■■□□□ 1.62
COL9A3-213ENST00000489045 C3orf58Q8NDZ4 430 aa25.18■■□□□ 1.62
COL9A3-213ENST00000489045 SMG7Q92540 1137 aaKnown RBP25.18■■□□□ 1.62
COL9A3-213ENST00000489045 ZNF707Q96C28 371 aaPredicted RBP25.18■■□□□ 1.62
COL9A3-213ENST00000489045 ZMAT2Q96NC0 199 aaKnown RBP25.18■■□□□ 1.62
COL9A3-213ENST00000489045 RHOBTB2Q9BYZ6 727 aa25.18■■□□□ 1.62
COL9A3-213ENST00000489045 DOCK8Q8NF50 2099 aa25.17■■□□□ 1.62
COL9A3-213ENST00000489045 CLUHO75153 1309 aa25.17■■□□□ 1.62
COL9A3-213ENST00000489045 H0YCG3 227 aa25.17■■□□□ 1.62
COL9A3-213ENST00000489045 MCM6Q14566 821 aa25.17■■□□□ 1.62
COL9A3-213ENST00000489045 CD300LGQ6UXG3 332 aa25.17■■□□□ 1.62
COL9A3-213ENST00000489045 RAD54LQ92698 747 aa25.17■■□□□ 1.62
COL9A3-213ENST00000489045 SMOC2Q9H3U7 446 aa25.17■■□□□ 1.62
COL9A3-213ENST00000489045 WDR6Q9NNW5 1121 aaKnown RBP25.17■■□□□ 1.62
COL9A3-213ENST00000489045 SLC38A7Q9NVC3 462 aa25.17■■□□□ 1.62
COL9A3-213ENST00000489045 ZDHHC7Q9NXF8 308 aa25.17■■□□□ 1.62
COL9A3-213ENST00000489045 CNTN3Q9P232 1028 aa25.17■■□□□ 1.62
COL9A3-213ENST00000489045 MEFVO15553 781 aaPredicted RBP25.16■■□□□ 1.62
COL9A3-213ENST00000489045 FAM13AO94988 1023 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 PAPLNO95428 1278 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 KCNE1P15382 129 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 FGFR3P22607 806 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 PTPAQ15257 358 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 SEZ6Q53EL9 994 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 FAM173BQ6P4H8 233 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 PDXDC1Q6P996 788 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 HAUS6Q7Z4H7 955 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 SUGP1Q8IWZ8 645 aaKnown RBP25.16■■□□□ 1.62
COL9A3-213ENST00000489045 UBALD2Q8IYN6 164 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 FBXL6Q8N531 539 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 DOCK6Q96HP0 2047 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 INTS4Q96HW7 963 aaKnown RBP25.16■■□□□ 1.62
COL9A3-213ENST00000489045 FOXD4L1Q9NU39 408 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 FBXW11Q9UKB1 542 aa25.16■■□□□ 1.62
COL9A3-213ENST00000489045 CLDN3O15551 220 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 ADAM12O43184 909 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 KRT18P05783 430 aaKnown RBP25.15■■□□□ 1.62
COL9A3-213ENST00000489045 MARCKSP29966 332 aaPredicted RBP25.15■■□□□ 1.62
COL9A3-213ENST00000489045 BRCC3P46736 316 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 MCL1Q07820 350 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 SPECC1Q5M775 1068 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 MYCT1Q8N699 235 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 LARP4BQ92615 738 aaKnown RBP25.15■■□□□ 1.62
COL9A3-213ENST00000489045 BICD1Q96G01 975 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 PRKD2Q9BZL6 878 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 CCSER1Q9C0I3 900 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 KCNH6Q9H252 994 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 PIDD1Q9HB75 910 aa25.15■■□□□ 1.62
COL9A3-213ENST00000489045 WDFY4Q6ZS81 3184 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 I3L4J1 428 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 K7ELQ4 463 aaPredicted RBP25.14■■□□□ 1.62
COL9A3-213ENST00000489045 K7ENM7 598 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 PODXLO00592 558 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 TRAPPC3O43617 180 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 N4BP1O75113 896 aaKnown RBP25.14■■□□□ 1.62
COL9A3-213ENST00000489045 ZMYND10O75800 440 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 TKTP29401 623 aaKnown RBP25.14■■□□□ 1.62
COL9A3-213ENST00000489045 MATR3P43243 847 aaKnown RBP eCLIP25.14■■□□□ 1.62
COL9A3-213ENST00000489045 ZNF131P52739 623 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 USP49Q70CQ1 688 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 STAMQ92783 540 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 KCNN1Q92952 543 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 C18orf25Q96B23 403 aaPredicted RBP25.14■■□□□ 1.62
COL9A3-213ENST00000489045 DDX27Q96GQ7 796 aaKnown RBP25.14■■□□□ 1.62
COL9A3-213ENST00000489045 EPSTI1Q96J88 318 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 HAPLN2Q9GZV7 340 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 PARVGQ9HBI0 331 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 MTRRQ9UBK8 725 aa25.14■■□□□ 1.62
COL9A3-213ENST00000489045 FBXO2Q9UK22 296 aaPredicted RBP25.14■■□□□ 1.62
COL9A3-213ENST00000489045 GBP2P32456 591 aaPredicted RBP25.13■■□□□ 1.61
COL9A3-213ENST00000489045 SLC10A6Q3KNW5 377 aa25.13■■□□□ 1.61
COL9A3-213ENST00000489045 LIN9Q5TKA1 542 aa25.13■■□□□ 1.61
COL9A3-213ENST00000489045 ZHX3Q9H4I2 956 aa25.13■■□□□ 1.61
COL9A3-213ENST00000489045 TBCAO75347 108 aaKnown RBP25.12■■□□□ 1.61
COL9A3-213ENST00000489045 PDGFBP01127 241 aaPredicted RBP25.12■■□□□ 1.61
COL9A3-213ENST00000489045 CXCL8P10145 99 aa25.12■■□□□ 1.61
COL9A3-213ENST00000489045 OR1D2P34982 312 aa25.12■■□□□ 1.61
COL9A3-213ENST00000489045 LIG4P49917 911 aa25.12■■□□□ 1.61
COL9A3-213ENST00000489045 CEBPZQ03701 1054 aaKnown RBP25.12■■□□□ 1.61
COL9A3-213ENST00000489045 TBX20Q9UMR3 447 aa25.12■■□□□ 1.61
COL9A3-213ENST00000489045 MTMR6Q9Y217 621 aa25.12■■□□□ 1.61
COL9A3-213ENST00000489045 SRPRBQ9Y5M8 271 aaKnown RBP25.12■■□□□ 1.61
COL9A3-213ENST00000489045 HNRNPDLO14979 420 aaKnown RBP25.11■■□□□ 1.61
COL9A3-213ENST00000489045 TRAK2O60296 914 aa25.11■■□□□ 1.61
COL9A3-213ENST00000489045 C8AP07357 584 aa25.11■■□□□ 1.61
COL9A3-213ENST00000489045 RAB33AQ14088 237 aa25.11■■□□□ 1.61
COL9A3-213ENST00000489045 RSPO2Q6UXX9 243 aaPredicted RBP25.11■■□□□ 1.61
COL9A3-213ENST00000489045 ANKS3Q6ZW76 656 aa25.11■■□□□ 1.61
COL9A3-213ENST00000489045 MYADMQ96S97 322 aa25.11■■□□□ 1.61
COL9A3-213ENST00000489045 KCNK12Q9HB15 430 aa25.11■■□□□ 1.61
COL9A3-213ENST00000489045 CDY1Q9Y6F8 540 aa25.11■■□□□ 1.61
COL9A3-213ENST00000489045 SCP2P22307 547 aa25.1■■□□□ 1.61
COL9A3-213ENST00000489045 RPL9P32969 192 aaKnown RBP25.1■■□□□ 1.61
COL9A3-213ENST00000489045 DDIT3P35638 169 aa25.1■■□□□ 1.61
COL9A3-213ENST00000489045 VCPP55072 806 aaKnown RBP25.1■■□□□ 1.61
COL9A3-213ENST00000489045 PPM1LQ5SGD2 360 aa25.1■■□□□ 1.61
COL9A3-213ENST00000489045 CLIC6Q96NY7 704 aa25.1■■□□□ 1.61
COL9A3-213ENST00000489045 FIZ1Q96SL8 496 aa25.1■■□□□ 1.61
COL9A3-213ENST00000489045 CCDC39Q9UFE4 941 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms