RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 HNRNPCL2B2RXH8 293 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 ZNF189O75820 626 aaPredicted RBP17.34■□□□□ 0.37
COL7A1-210ENST00000487017 KLHDC7AQ5VTJ3 777 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 TRPM8Q7Z2W7 1104 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 ERP44Q9BS26 406 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 FOXP3Q9BZS1 431 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 SUFUQ9UMX1 484 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 SLC4A7Q9Y6M7 1214 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 A8MXQ7 604 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 RASA1P20936 1047 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 OCA2Q04671 838 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 SNRNP35Q16560 246 aaKnown RBP17.34■□□□□ 0.37
COL7A1-210ENST00000487017 GANCQ8TET4 914 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 C9orf72Q96LT7 481 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 JPH1Q9HDC5 661 aaPredicted RBP17.34■□□□□ 0.37
COL7A1-210ENST00000487017 WARS2Q9UGM6 360 aaKnown RBP17.34■□□□□ 0.37
COL7A1-210ENST00000487017 ARHGAP10A1A4S6 786 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 PDHBP11177 359 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 SERPINB4P48594 390 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 ALDH18A1P54886 795 aaKnown RBP17.34■□□□□ 0.37
COL7A1-210ENST00000487017 ERVK-24P63145 666 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 NME3Q13232 169 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 LONP2Q86WA8 852 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 C18orf8Q96DM3 657 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 PNKPQ96T60 521 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 KCNN4O15554 427 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 FAM107AO95990 144 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 COMTP21964 271 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 MAPRE2Q15555 327 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 PTGISQ16647 500 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 KYAT1Q16773 422 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 RANBP17Q9H2T7 1088 aaKnown RBP17.34■□□□□ 0.37
COL7A1-210ENST00000487017 NPHS2Q9NP85 383 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 SLC13A4Q9UKG4 626 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 ENO1P06733 434 aaKnown RBP17.34■□□□□ 0.37
COL7A1-210ENST00000487017 GNAT1P11488 350 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 KRT33BQ14525 404 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 TWF2Q6IBS0 349 aaKnown RBP17.34■□□□□ 0.37
COL7A1-210ENST00000487017 DNAJC7Q99615 494 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 MKNK1Q9BUB5 465 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 ZFATQ9P243 1243 aa17.34■□□□□ 0.37
COL7A1-210ENST00000487017 CAMSAP1Q5T5Y3 1602 aa17.33■□□□□ 0.37
COL7A1-210ENST00000487017 DGAT1O75907 488 aa17.33■□□□□ 0.37
COL7A1-210ENST00000487017 GNL1P36915 607 aaPredicted RBP17.33■□□□□ 0.37
COL7A1-210ENST00000487017 TSPY1Q01534 308 aa17.33■□□□□ 0.37
COL7A1-210ENST00000487017 TRAPPC11Q7Z392 1133 aa17.33■□□□□ 0.37
COL7A1-210ENST00000487017 DDX42Q86XP3 938 aaKnown RBP eCLIP17.33■□□□□ 0.37
COL7A1-210ENST00000487017 ZNF668Q96K58 619 aaPredicted RBP17.33■□□□□ 0.37
COL7A1-210ENST00000487017 CELF4Q9BZC1 486 aaKnown RBP17.33■□□□□ 0.37
COL7A1-210ENST00000487017 NYAP2Q9P242 653 aa17.33■□□□□ 0.37
COL7A1-210ENST00000487017 SZRD1Q7Z422 152 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 STAMBPL1Q96FJ0 436 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 WDR35Q9P2L0 1181 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 TFR2Q9UP52 801 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 KDSRQ06136 332 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 NFIXQ14938 502 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 NDUFAF2Q8N183 169 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 SNX5Q9Y5X3 404 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 C4orf33Q8N1A6 199 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 SLC10A4Q96EP9 437 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 TRAF3IP3Q9Y228 551 aa17.33■□□□□ 0.36
COL7A1-210ENST00000487017 CPS1P31327 1500 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 PLA2G4AP47712 749 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 SMAD1Q15797 465 aaKnown RBP17.32■□□□□ 0.36
COL7A1-210ENST00000487017 FASTKD1Q53R41 847 aaKnown RBP17.32■□□□□ 0.36
COL7A1-210ENST00000487017 GRAMD4Q6IC98 578 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 SPATA33Q96N06 139 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 FUCA2Q9BTY2 467 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 ALG6Q9Y672 507 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 TMEM120BA0PK00 339 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 SEC24CP53992 1094 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 PIGHQ14442 188 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-210ENST00000487017 C16orf87Q6PH81 154 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 PID1Q7Z2X4 250 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 ACAP3Q96P50 834 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 FUT8Q9BYC5 575 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 SYCE1LA8MT33 242 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 KIF1CO43896 1103 aaKnown RBP17.32■□□□□ 0.36
COL7A1-210ENST00000487017 H2AFXP16104 143 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-210ENST00000487017 PDIA6Q15084 440 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 ZC2HC1CQ53FD0 456 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-210ENST00000487017 ZNF772Q68DY9 489 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-210ENST00000487017 WDR93Q6P2C0 686 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 DAGLBQ8NCG7 672 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 CATSPER1Q8NEC5 780 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 TBC1D16Q8TBP0 767 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 NDUFB10O96000 172 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 PRKCBP05771 671 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 ARHGEF26Q96DR7 871 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 KIF12Q96FN5 646 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 ZBTB12Q9Y330 459 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-210ENST00000487017 ACTR2P61160 394 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 DNAL1Q4LDG9 190 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 SLC10A5Q5PT55 438 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 SCN4BQ8IWT1 228 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 RBBP8NLQ8NC74 664 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-210ENST00000487017 XPO7Q9UIA9 1087 aaKnown RBP17.32■□□□□ 0.36
COL7A1-210ENST00000487017 HPSEQ9Y251 543 aa17.32■□□□□ 0.36
COL7A1-210ENST00000487017 CCT8L1PA6NM43 557 aa17.31■□□□□ 0.36
COL7A1-210ENST00000487017 CORO7P57737 925 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms