RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 SYNPO2Q9UMS6 1093 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 NEU2Q9Y3R4 380 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 GOLGA8IPA6NC78 632 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 GOLGA8JA6NMD2 632 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 FOXN2P32314 431 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 ATP11AP98196 1134 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 STAT4Q14765 748 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 CLEC16AQ2KHT3 1053 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 SEPT14Q6ZU15 432 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 BZW1Q7L1Q6 419 aaKnown RBP13.01□□□□□ -0.33
COL3A1-206ENST00000487010 MIER3Q7Z3K6 550 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 HAUS6Q7Z4H7 955 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 FAM212AQ96EL1 285 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 SLC5A4Q9NY91 659 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 COQ4Q9Y3A0 265 aa13.01□□□□□ -0.33
COL3A1-206ENST00000487010 SLX4Q8IY92 1834 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 WFS1O76024 890 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 UNC5CO95185 931 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 P4HBP07237 508 aaKnown RBP13□□□□□ -0.33
COL3A1-206ENST00000487010 GPC3P51654 580 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 CENPCQ03188 943 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 TNIP1Q15025 636 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 KRT39Q6A163 491 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 CBWD2Q8IUF1 395 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 RELL1Q8IUW5 271 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 CNKSR1Q969H4 720 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 NT5C1BQ96P26 610 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 CCDC77Q9BR77 488 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 MXRA8Q9BRK3 442 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 PITPNM3Q9BZ71 974 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 TRIM6Q9C030 488 aaPredicted RBP13□□□□□ -0.33
COL3A1-206ENST00000487010 ST6GALNAC4Q9H4F1 302 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 EURLQ9NYK6 297 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 USP21Q9UK80 565 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 R3HDM2Q9Y2K5 976 aaKnown RBP13□□□□□ -0.33
COL3A1-206ENST00000487010 MRPL11Q9Y3B7 192 aaKnown RBP13□□□□□ -0.33
COL3A1-206ENST00000487010 ZNF536O15090 1300 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 ECE1P42892 770 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 SLC1A1P43005 524 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 VPS41P49754 854 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 RARRES1P49788 294 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 CCNG1P51959 295 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 IL9RQ01113 521 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 SNRNP35Q16560 246 aaKnown RBP13□□□□□ -0.33
COL3A1-206ENST00000487010 TMEM63BQ5T3F8 832 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 ANKRD35Q8N283 1001 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 BBOF1Q8ND07 529 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 DDX27Q96GQ7 796 aaKnown RBP13□□□□□ -0.33
COL3A1-206ENST00000487010 RAB3IPQ96QF0 476 aaPredicted RBP13□□□□□ -0.33
COL3A1-206ENST00000487010 RANBP17Q9H2T7 1088 aaKnown RBP13□□□□□ -0.33
COL3A1-206ENST00000487010 DBNDD1Q9H9R9 158 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 ZHX2Q9Y6X8 837 aa13□□□□□ -0.33
COL3A1-206ENST00000487010 ANKRD31Q8N7Z5 1873 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 MROH7Q68CQ1 1323 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 HGSO14964 777 aaPredicted RBP12.99□□□□□ -0.33
COL3A1-206ENST00000487010 SLC16A4O15374 487 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 NEBLO76041 1014 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 ATP2A2P16615 1042 aaKnown RBP12.99□□□□□ -0.33
COL3A1-206ENST00000487010 RRM1P23921 792 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 WDR4P57081 412 aaKnown RBP12.99□□□□□ -0.33
COL3A1-206ENST00000487010 ADCY1Q08828 1119 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.99□□□□□ -0.33
COL3A1-206ENST00000487010 PODNQ7Z5L7 613 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 MCOLN2Q8IZK6 566 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 FBF1Q8TES7 1133 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 PARD3BQ8TEW8 1205 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 MAML1Q92585 1016 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 DHX38Q92620 1227 aaKnown RBP12.99□□□□□ -0.33
COL3A1-206ENST00000487010 CCDC127Q96BQ5 260 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 IWS1Q96ST2 819 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 ETNK1Q9HBU6 452 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 TMEM8AQ9HCN3 771 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 AVENQ9NQS1 362 aaPredicted RBP12.99□□□□□ -0.33
COL3A1-206ENST00000487010 TXLNGQ9NUQ3 528 aa12.99□□□□□ -0.33
COL3A1-206ENST00000487010 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.99□□□□□ -0.33
COL3A1-206ENST00000487010 FAM47DPA6NHR8 397 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 RASA4BC9J798 803 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 MAGEB2O15479 319 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 RASA4O43374 803 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 ATP5HO75947 161 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 UNGP13051 313 aaPredicted RBP12.98□□□□□ -0.33
COL3A1-206ENST00000487010 ITGB5P18084 799 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 ADSSP30520 456 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 NCKAP1LP55160 1127 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 PTP4A2Q12974 167 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 KLF1Q13351 362 aaPredicted RBP12.98□□□□□ -0.33
COL3A1-206ENST00000487010 CCNG2Q16589 344 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 IZUMO3Q5VZ72 239 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 ZNF365Q70YC5 407 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 DHX37Q8IY37 1157 aaKnown RBP12.98□□□□□ -0.33
COL3A1-206ENST00000487010 RIBC1Q8N443 379 aaPredicted RBP12.98□□□□□ -0.33
COL3A1-206ENST00000487010 CCDC89Q8N998 374 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 FBXL13Q8NEE6 735 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 UTP4Q969X6 686 aaKnown RBP12.98□□□□□ -0.33
COL3A1-206ENST00000487010 FAM81BQ96LP2 452 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 C9orf72Q96LT7 481 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 MYLK2Q9H1R3 596 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 RAB20Q9NX57 234 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 PKD2L1Q9P0L9 805 aa12.98□□□□□ -0.33
COL3A1-206ENST00000487010 STARD13Q9Y3M8 1113 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms