RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 PTPN5P54829 565 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 APBA1Q02410 837 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 GPM6BQ13491 265 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 BTG3Q14201 252 aaPredicted RBP9.78□□□□□ -0.84
COL12A1-208ENST00000486533 LRCH2Q5VUJ6 765 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 CENPPQ6IPU0 288 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 KIAA0319LQ8IZA0 1049 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 NEK11Q8NG66 645 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 LINC01599Q8WXQ3 324 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 SYN2Q92777 582 aaPredicted RBP9.78□□□□□ -0.84
COL12A1-208ENST00000486533 GJA10Q969M2 543 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 MRPL38Q96DV4 380 aaKnown RBP9.78□□□□□ -0.84
COL12A1-208ENST00000486533 CEP63Q96MT8 703 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 NECAB3Q96P71 396 aaPredicted RBP9.78□□□□□ -0.84
COL12A1-208ENST00000486533 PNKPQ96T60 521 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 MAPK8IP1Q9UQF2 711 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 SQORQ9Y6N5 450 aa9.78□□□□□ -0.84
COL12A1-208ENST00000486533 SSU72P8A0A1W2PR75 194 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 H3BNC9 293 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 AKR1B10O60218 316 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 OPA1O60313 960 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 MARCH6O60337 910 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 LCA5LO95447 670 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 TDP2O95551 362 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 C22orf31O95567 290 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 BMP1P13497 986 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 VSNL1P62760 191 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 KIZQ2M2Z5 673 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 C6orf132Q5T0Z8 1188 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 GBP6Q6ZN66 633 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 CACNA2D4Q7Z3S7 1137 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 MMGT1Q8N4V1 131 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 WNT2BQ93097 391 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 FAM167AQ96KS9 214 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 RUFY1Q96T51 708 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 RIT2Q99578 217 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 CHP1Q99653 195 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 DUSP9Q99956 384 aaKnown RBP9.77□□□□□ -0.85
COL12A1-208ENST00000486533 TEKT3Q9BXF9 490 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 TMEM60Q9H2L4 133 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 NDST4Q9H3R1 872 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 PLAGL2Q9UPG8 496 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 MYO7AQ13402 2215 aa9.77□□□□□ -0.85
COL12A1-208ENST00000486533 DENND3A2RUS2 1198 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 GOLGA8CPA6NN73 597 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 GOLGA8KD6RF30 607 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 PJA2O43164 708 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 EDIL3O43854 480 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 DGKIO75912 1065 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 CSPG5O95196 566 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 VTNP04004 478 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 OATP04181 439 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 STAG3L1P0CL83 205 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 TNFRSF8P28908 595 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 CDC25AP30304 524 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 SFNP31947 248 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 JAK3P52333 1124 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 HNRNPH2P55795 449 aaKnown RBP9.76□□□□□ -0.85
COL12A1-208ENST00000486533 PRKCEQ02156 737 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 SLC20A2Q08357 652 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 NNTQ13423 1086 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 IFI16Q16666 785 aaKnown RBP9.76□□□□□ -0.85
COL12A1-208ENST00000486533 TIGD5Q53EQ6 642 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 C10orf76Q5T2E6 689 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 ANKRD40Q6AI12 368 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 PPP4R3AQ6IN85 833 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 WDR59Q6PJI9 974 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 RTN4RL1Q86UN2 441 aaPredicted RBP9.76□□□□□ -0.85
COL12A1-208ENST00000486533 NPAS4Q8IUM7 802 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 FMNL3Q8IVF7 1028 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 CCDC65Q8IXS2 484 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 COG1Q8WTW3 980 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 TMEM40Q8WWA1 233 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 RAD54LQ92698 747 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 SLC5A5Q92911 643 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 OSMRQ99650 979 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 C11orf84Q9BUA3 381 aaPredicted RBP9.76□□□□□ -0.85
COL12A1-208ENST00000486533 EPC1Q9H2F5 836 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 UNC45AQ9H3U1 944 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 CDHR5Q9HBB8 845 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 RC3H2Q9HBD1 1191 aaKnown RBP9.76□□□□□ -0.85
COL12A1-208ENST00000486533 LRFN2Q9ULH4 789 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 AKT3Q9Y243 479 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 REXO2Q9Y3B8 237 aaKnown RBP9.76□□□□□ -0.85
COL12A1-208ENST00000486533 NOC2LQ9Y3T9 749 aaKnown RBP9.76□□□□□ -0.85
COL12A1-208ENST00000486533 RWDD3Q9Y3V2 267 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 ATP8B3O60423 1300 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 C5orf42Q9H799 3197 aa9.76□□□□□ -0.85
COL12A1-208ENST00000486533 MAGEB2O15479 319 aa9.75□□□□□ -0.85
COL12A1-208ENST00000486533 ATP1A1P05023 1023 aaKnown RBP9.75□□□□□ -0.85
COL12A1-208ENST00000486533 KCNA5P22460 613 aa9.75□□□□□ -0.85
COL12A1-208ENST00000486533 ANXA13P27216 316 aa9.75□□□□□ -0.85
COL12A1-208ENST00000486533 TMOD1P28289 359 aa9.75□□□□□ -0.85
COL12A1-208ENST00000486533 TECP42680 631 aa9.75□□□□□ -0.85
COL12A1-208ENST00000486533 CLCN3P51790 818 aa9.75□□□□□ -0.85
COL12A1-208ENST00000486533 KIF11P52732 1056 aa9.75□□□□□ -0.85
COL12A1-208ENST00000486533 CRYBB1P53674 252 aaPredicted RBP9.75□□□□□ -0.85
COL12A1-208ENST00000486533 FKBP3Q00688 224 aaKnown RBP9.75□□□□□ -0.85
COL12A1-208ENST00000486533 UGCGQ16739 394 aa9.75□□□□□ -0.85
COL12A1-208ENST00000486533 Q4G0T1 1027 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms