RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 DNAJC7Q99615 494 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 YIPF3Q9GZM5 350 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 CYP26B1Q9NR63 512 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 AGAP1Q9UPQ3 857 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 DUSP10Q9Y6W6 482 aa11.69□□□□□ -0.54
HDAC6-228ENST00000486227 AKAP3O75969 853 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 TCF7P36402 384 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-228ENST00000486227 PSMC4P43686 418 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 MDM2Q00987 491 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-228ENST00000486227 PDE1BQ01064 536 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 SKIV2LQ15477 1246 aaKnown RBP11.68□□□□□ -0.54
HDAC6-228ENST00000486227 CBWD2Q8IUF1 395 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 TRIM59Q8IWR1 403 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 RHOT1Q8IXI2 618 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 DNAAF3Q8N9W5 541 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 C1orf54Q8WWF1 131 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 CDKL2Q92772 493 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 PPP2R3CQ969Q6 453 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 CFAP57Q96MR6 1250 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 ACAP3Q96P50 834 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 TMEM8AQ9HCN3 771 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 NALCNQ8IZF0 1738 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 PFDN6O15212 129 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 MAGEB2O15479 319 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 CPP00450 1065 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 KRT14P02533 472 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 PGK2P07205 417 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 MSH2P43246 934 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 TMEM62Q0P6H9 643 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 FUT2Q10981 343 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 RNF180Q86T96 592 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 CYFIP2Q96F07 1278 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 MRIQ9BWK5 157 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 ASNSD1Q9NWL6 643 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 FZD1Q9UP38 647 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 HEY1Q9Y5J3 304 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 PON1P27169 355 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 FAM102AQ5T9C2 384 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-228ENST00000486227 IER5Q5VY09 327 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 CCDC137Q6PK04 289 aaKnown RBP11.68□□□□□ -0.54
HDAC6-228ENST00000486227 KDM7AQ6ZMT4 941 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 ZNF720Q7Z2F6 126 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 SH3RF1Q7Z6J0 888 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 MKL1Q969V6 931 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 PXMP2Q9NR77 195 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 CHORDC1Q9UHD1 332 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-228ENST00000486227 FAM237AA0A1B0GTK4 181 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 A8MXQ7 604 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 WNT7AO00755 349 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 SATB1Q01826 763 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 EFCAB12Q6NXP0 572 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 SCN4BQ8IWT1 228 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 RYBPQ8N488 228 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-228ENST00000486227 RBBP8NLQ8NC74 664 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-228ENST00000486227 PYROXD1Q8WU10 500 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 CALR3Q96L12 384 aaKnown RBP11.68□□□□□ -0.54
HDAC6-228ENST00000486227 IP6K2Q9UHH9 426 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 SLC8A2Q9UPR5 921 aa11.68□□□□□ -0.54
HDAC6-228ENST00000486227 FGRP09769 529 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 BMP6P22004 513 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 SDC4P31431 198 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 CHRNA3P32297 505 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 NPTX2P47972 431 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 AARSP49588 968 aaKnown RBP eCLIP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 IRX4P78413 519 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 TBX2Q13207 712 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 TFDP2Q14188 446 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 CRYMQ14894 314 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 SEZ6Q53EL9 994 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 PCNX4Q63HM2 1172 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 FOXR1Q6PIV2 292 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 DUSP9Q99956 384 aaKnown RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 LACRTQ9GZZ8 138 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 SAYSD1Q9NPB0 183 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 MAP3K20Q9NYL2 800 aaKnown RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 EML1O00423 815 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 TXNDC9O14530 226 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 ATP5HO75947 161 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 VIL1P09327 827 aaKnown RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 MYBL1P10243 752 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 POLE2P56282 527 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 LRRC23Q53EV4 343 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 PAPD7Q5XG87 772 aaKnown RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 CENPUQ71F23 418 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 PLEKHH3Q7Z736 793 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 C3orf20Q8ND61 904 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 MORC4Q8TE76 937 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 SYN2Q92777 582 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 THOC1Q96FV9 657 aaKnown RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 MTMR9Q96QG7 549 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 AGO4Q9HCK5 861 aaKnown RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 FBXL5Q9UKA1 691 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 PIN4Q9Y237 131 aaKnown RBP11.67□□□□□ -0.54
HDAC6-228ENST00000486227 ADORA2BP29275 332 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 SEC24CP53992 1094 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 SEPT6Q14141 434 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 C4orf50Q6ZRC1 276 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 OTOP1Q7RTM1 612 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 KIF9Q9HAQ2 790 aa11.67□□□□□ -0.54
HDAC6-228ENST00000486227 PIDD1Q9HB75 910 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms