RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 TRIM59Q8IWR1 403 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 GSTCDQ8NEC7 633 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 URGCPQ8TCY9 931 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 CACTINQ8WUQ7 758 aaKnown RBP13.26□□□□□ -0.29
SDC1-206ENST00000482879 RNPC3Q96LT9 517 aaKnown RBP13.26□□□□□ -0.29
SDC1-206ENST00000482879 ZMAT2Q96NC0 199 aaKnown RBP13.26□□□□□ -0.29
SDC1-206ENST00000482879 CASD1Q96PB1 797 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 TSPAN18Q96SJ8 248 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 CGRRF1Q99675 332 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 TMEM117Q9H0C3 514 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.26□□□□□ -0.29
SDC1-206ENST00000482879 TBKBP1A7MCY6 615 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 PTGESO14684 152 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 INPPL1O15357 1258 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 DGKIO75912 1065 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 POMCP01189 267 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 THP07101 528 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 TPM2P07951 284 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 NFICP08651 508 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 PRKCSHP14314 528 aaPredicted RBP13.25□□□□□ -0.29
SDC1-206ENST00000482879 ATP2A2P16615 1042 aaKnown RBP13.25□□□□□ -0.29
SDC1-206ENST00000482879 MCCD1P59942 119 aaPredicted RBP13.25□□□□□ -0.29
SDC1-206ENST00000482879 TFAMQ00059 246 aaKnown RBP13.25□□□□□ -0.29
SDC1-206ENST00000482879 KRT31Q15323 416 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 MAN2A1Q16706 1144 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 DUOXA2Q1HG44 320 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 C1orf220Q5T0J3 134 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 RASIP1Q5U651 963 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 NT5DC4Q86YG4 428 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 WDR49Q8IV35 697 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 EFCAB13Q8IY85 973 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 PHOSPHO2Q8TCD6 241 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 ZNF516Q92618 1163 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 SLC35C1Q96A29 364 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 ANKRD36BP1Q96IX9 119 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 SLC9A7Q96T83 725 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 TUBGCP2Q9BSJ2 902 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 ZBED2Q9BTP6 218 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 MMRN2Q9H8L6 949 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 INTS13Q9NVM9 706 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 TAB2Q9NYJ8 693 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 KANSL3Q9P2N6 904 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 LIMA1Q9UHB6 759 aaKnown RBP13.25□□□□□ -0.29
SDC1-206ENST00000482879 DERAQ9Y315 318 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 C2CD2Q9Y426 696 aa13.25□□□□□ -0.29
SDC1-206ENST00000482879 SCN1AP35498 2009 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 PTPRJQ12913 1337 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 PES1O00541 588 aaKnown RBP13.24□□□□□ -0.29
SDC1-206ENST00000482879 XPOTO43592 962 aaKnown RBP13.24□□□□□ -0.29
SDC1-206ENST00000482879 STX10O60499 249 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 TNNC2P02585 160 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 TMEM191BP0C7N4 346 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 GTF2H1P32780 548 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 GCLMP48507 274 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 COPB1P53618 953 aaKnown RBP13.24□□□□□ -0.29
SDC1-206ENST00000482879 AP3M2P53677 418 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 CLDN10P78369 228 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 RNASELQ05823 741 aaKnown RBP13.24□□□□□ -0.29
SDC1-206ENST00000482879 PPP3CAQ08209 521 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 KCNH2Q12809 1159 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 GRIK3Q13003 919 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 ZBTB6Q15916 424 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 PAN2Q504Q3 1202 aaKnown RBP13.24□□□□□ -0.29
SDC1-206ENST00000482879 HERC6Q8IVU3 1022 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 BEST2Q8NFU1 509 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 OR5B17Q8NGF7 314 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 RSPH1Q8WYR4 309 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 C18orf25Q96B23 403 aaPredicted RBP13.24□□□□□ -0.29
SDC1-206ENST00000482879 FAM84AQ96KN4 292 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 PPP1R10Q96QC0 940 aaKnown RBP13.24□□□□□ -0.29
SDC1-206ENST00000482879 YME1L1Q96TA2 773 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 VPS16Q9H269 839 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 SLC38A7Q9NVC3 462 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 UBQLN1Q9UMX0 589 aaKnown RBP13.24□□□□□ -0.29
SDC1-206ENST00000482879 PLAGL2Q9UPG8 496 aa13.24□□□□□ -0.29
SDC1-206ENST00000482879 GBF1Q92538 1859 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 LRRC10BA6NIK2 292 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 PHACTR2O75167 634 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 GJB5O95377 273 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 SERPINC1P01008 464 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 AFPP02771 609 aaKnown RBP13.23□□□□□ -0.29
SDC1-206ENST00000482879 C4BPAP04003 597 aaKnown RBP13.23□□□□□ -0.29
SDC1-206ENST00000482879 BMP8BP34820 402 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 GUCY2FP51841 1108 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 FANCCQ00597 558 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 BIRC3Q13489 604 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 VWA3BQ502W6 1294 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 ZNF689Q96CS4 500 aaPredicted RBP13.23□□□□□ -0.29
SDC1-206ENST00000482879 FAM193BQ96PV7 902 aaPredicted RBP13.23□□□□□ -0.29
SDC1-206ENST00000482879 MRPL9Q9BYD2 267 aaKnown RBP13.23□□□□□ -0.29
SDC1-206ENST00000482879 MTMR12Q9C0I1 747 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 NDST4Q9H3R1 872 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 TBC1D13Q9NVG8 400 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 DPP3Q9NY33 737 aa13.23□□□□□ -0.29
SDC1-206ENST00000482879 DDHD2O94830 711 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 CYP3A5P20815 502 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 FMO5P49326 533 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 PLCB2Q00722 1185 aa13.22□□□□□ -0.29
SDC1-206ENST00000482879 SOX4Q06945 474 aaPredicted RBP13.22□□□□□ -0.29
SDC1-206ENST00000482879 TUSC3Q13454 348 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms