RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 RPL9P32969 192 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 VCPP55072 806 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 RAB33AQ14088 237 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 KYAT1Q16773 422 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 LARP1BQ659C4 914 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 PRSS55Q6UWB4 352 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 CEP57Q86XR8 500 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 TMEM161BQ8NDZ6 487 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 CALML4Q96GE6 196 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 ACAP3Q96P50 834 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 PNMA5Q96PV4 448 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 CLSTN3Q9BQT9 956 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 CACNG4Q9UBN1 327 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 SYN3O14994 580 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 GALR2O43603 387 aaPredicted RBP13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 C8AP07357 584 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 PLA2G4BP0C869 781 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 MAPTP10636 758 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 RPL17P18621 184 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 PDCP20941 246 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 LONP1P36776 959 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 MRE11P49959 708 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 CLCNKBP51801 687 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 NCKAP1LP55160 1127 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 TCF15Q12870 199 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 NOLC1Q14978 699 aaKnown RBP eCLIP13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 GLRA4Q5JXX5 417 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 IER5LQ5T953 404 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 ASTLQ6HA08 431 aaPredicted RBP13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 CEP120Q8N960 986 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 RABGGTAQ92696 567 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 TSPAN18Q96SJ8 248 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 TCHPQ9BT92 498 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 TARS2Q9BW92 718 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 MFSD1Q9H3U5 465 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 PLEKHA5Q9HAU0 1116 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 WNT16Q9UBV4 365 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 USP20Q9Y2K6 914 aa13.28□□□□□ -0.28
SQSTM1-207ENST00000481335 USP34Q70CQ2 3546 aa13.27□□□□□ -0.28
SQSTM1-207ENST00000481335 MYH15Q9Y2K3 1946 aa13.27□□□□□ -0.28
SQSTM1-207ENST00000481335 SLC16A4O15374 487 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 CLDN3O15551 220 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 N4BP1O75113 896 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 LAMP2P13473 410 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 UBA7P41226 1012 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 MCL1Q07820 350 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 ZRSR1Q15695 479 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 PPM1LQ5SGD2 360 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 SLC8B1Q6J4K2 584 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 ALYREFQ86V81 257 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 GLYCTKQ8IVS8 523 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 FEZF2Q8TBJ5 459 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 RTP3Q9BQQ7 232 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 CXCL16Q9H2A7 254 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 POLD4Q9HCU8 107 aa13.27□□□□□ -0.29
SQSTM1-207ENST00000481335 ANHXE9PGG2 379 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 PODXLO00592 558 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 PDGFBP01127 241 aaPredicted RBP13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 PIGRP01833 764 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 SPATA31D3P0C874 917 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 SRFP11831 508 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 AOC1P19801 751 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 FSHRP23945 695 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 ZNF131P52739 623 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 CUL4AQ13619 759 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 CD300LGQ6UXG3 332 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 SPATA31D4Q6ZUB0 917 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 MTSS1LQ765P7 747 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 GET4Q7L5D6 327 aaPredicted RBP13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 C3orf58Q8NDZ4 430 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 MYADMQ96S97 322 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 NOTCH4Q99466 2003 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 OXCT2Q9BYC2 517 aaPredicted RBP13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 PARVGQ9HBI0 331 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 KCNH3Q9ULD8 1083 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 MAFFQ9ULX9 164 aa13.26□□□□□ -0.29
SQSTM1-207ENST00000481335 MYO15AQ9UKN7 3530 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 SFI1A8K8P3 1242 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 H7C4K7 107 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 XPOTO43592 962 aaKnown RBP13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 CLTAP09496 248 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 PAX3P23760 479 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 TKTP29401 623 aaKnown RBP13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 OR1D2P34982 312 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 OSTNP61366 133 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 SOX4Q06945 474 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 AXDND1Q5T1B0 1012 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 CWF19L1Q69YN2 538 aaKnown RBP13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 SLC44A3Q8N4M1 653 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 TMEM105Q8N8V8 129 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 ZNF461Q8TAF7 563 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 SLC7A14Q8TBB6 771 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 ZMAT2Q96NC0 199 aaKnown RBP13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 CCSER1Q9C0I3 900 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 SMOC2Q9H3U7 446 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 GOLGA2P5Q9HBQ8 144 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 AVENQ9NQS1 362 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 SLC2A4RGQ9NR83 387 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 ANKFY1Q9P2R3 1169 aa13.25□□□□□ -0.29
SQSTM1-207ENST00000481335 FBXL21Q9UKT6 434 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms