RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 SPIDRQ14159 915 aa6.2□□□□□ -1.42
VPS50-214ENST00000477935 PRKD1Q15139 912 aaPredicted RBP6.2□□□□□ -1.42
VPS50-214ENST00000477935 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.2□□□□□ -1.42
VPS50-214ENST00000477935 DDX42Q86XP3 938 aaKnown RBP eCLIP6.2□□□□□ -1.42
VPS50-214ENST00000477935 CMTM4Q8IZR5 234 aa6.2□□□□□ -1.42
VPS50-214ENST00000477935 ZNF808Q8N4W9 903 aaPredicted RBP6.2□□□□□ -1.42
VPS50-214ENST00000477935 COG1Q8WTW3 980 aa6.2□□□□□ -1.42
VPS50-214ENST00000477935 C14orf119Q9NWQ9 140 aa6.2□□□□□ -1.42
VPS50-214ENST00000477935 ING3Q9NXR8 418 aa6.2□□□□□ -1.42
VPS50-214ENST00000477935 NCDNQ9UBB6 729 aa6.2□□□□□ -1.42
VPS50-214ENST00000477935 EDARQ9UNE0 448 aa6.2□□□□□ -1.42
VPS50-214ENST00000477935 TESMINQ9Y4I5 508 aa6.2□□□□□ -1.42
VPS50-214ENST00000477935 COL5A2P05997 1499 aaPredicted RBP6.2□□□□□ -1.42
VPS50-214ENST00000477935 USP19O94966 1318 aa6.2□□□□□ -1.42
VPS50-214ENST00000477935 A0A1W2PR48 441 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 UBE2QL1A1L167 161 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 INSRRP14616 1297 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 SCAND1P57086 179 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 D2HGDHQ8N465 521 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 TGFBRAP1Q8WUH2 860 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 FAM89AQ96GI7 184 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 BORCS6Q96GS4 357 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 AHCYL2Q96HN2 611 aaKnown RBP6.19□□□□□ -1.42
VPS50-214ENST00000477935 MPHOSPH9Q99550 1183 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 TCF25Q9BQ70 676 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 KRTAP4-9Q9BYQ8 210 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 NMRK2Q9NPI5 230 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 DPP7Q9UHL4 492 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 ATP8A1Q9Y2Q0 1164 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 SH3BP1Q9Y3L3 701 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 WDR17Q8IZU2 1322 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 TULP4Q9NRJ4 1543 aa6.19□□□□□ -1.42
VPS50-214ENST00000477935 TRPM3Q9HCF6 1732 aaPredicted RBP6.19□□□□□ -1.42
VPS50-214ENST00000477935 KIF1BO60333 1816 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 SBF2Q86WG5 1849 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 HHEXQ03014 270 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 ZXDCQ2QGD7 858 aaPredicted RBP6.18□□□□□ -1.42
VPS50-214ENST00000477935 SPDYAQ5MJ70 313 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 FAM111BQ6SJ93 734 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 TAS1R1Q7RTX1 841 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 GGNQ86UU5 652 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 MSL3Q8N5Y2 521 aaKnown RBP6.18□□□□□ -1.42
VPS50-214ENST00000477935 RAX2Q96IS3 184 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 TLR9Q9NR96 1032 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 MYRFQ9Y2G1 1151 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 WDR90Q96KV7 1748 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 IGSF1Q8N6C5 1336 aa6.18□□□□□ -1.42
VPS50-214ENST00000477935 USP6P35125 1406 aa6.17□□□□□ -1.42
VPS50-214ENST00000477935 TNS2Q63HR2 1409 aa6.17□□□□□ -1.42
VPS50-214ENST00000477935 CAPN14A8MX76 684 aa6.17□□□□□ -1.42
VPS50-214ENST00000477935 NRP1O14786 923 aa6.17□□□□□ -1.42
VPS50-214ENST00000477935 TMEM127O75204 238 aa6.17□□□□□ -1.42
VPS50-214ENST00000477935 LTA4HP09960 611 aaKnown RBP6.17□□□□□ -1.42
VPS50-214ENST00000477935 CTCFP49711 727 aaPredicted RBP6.17□□□□□ -1.42
VPS50-214ENST00000477935 NPEPPSP55786 919 aa6.17□□□□□ -1.42
VPS50-214ENST00000477935 ERVK-21P61565 698 aa6.17□□□□□ -1.42
VPS50-214ENST00000477935 MRPS9P82933 396 aaKnown RBP6.17□□□□□ -1.42
VPS50-214ENST00000477935 SPTY2D1Q68D10 685 aaPredicted RBP6.17□□□□□ -1.42
VPS50-214ENST00000477935 SGMS1Q86VZ5 419 aa6.17□□□□□ -1.42
VPS50-214ENST00000477935 SH3RF3Q8TEJ3 882 aaPredicted RBP6.17□□□□□ -1.42
VPS50-214ENST00000477935 ABHD8Q96I13 439 aa6.17□□□□□ -1.42
VPS50-214ENST00000477935 QRSL1Q9H0R6 528 aaKnown RBP6.17□□□□□ -1.42
VPS50-214ENST00000477935 PIK3C2GO75747 1445 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 RGPD8O14715 1765 aaPredicted RBP6.16□□□□□ -1.42
VPS50-214ENST00000477935 K7ESF4 209 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 HIBADHP31937 336 aaKnown RBP6.16□□□□□ -1.42
VPS50-214ENST00000477935 GPR3P46089 330 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 CDK17Q00537 523 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 MEF2AQ02078 507 aaPredicted RBP6.16□□□□□ -1.42
VPS50-214ENST00000477935 PUM1Q14671 1186 aaKnown RBP eCLIP6.16□□□□□ -1.42
VPS50-214ENST00000477935 UBE3CQ15386 1083 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 ELAVL1Q15717 326 aaKnown RBP6.16□□□□□ -1.42
VPS50-214ENST00000477935 DBX2Q6ZNG2 339 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 KCNK18Q7Z418 384 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 SPRED1Q7Z699 444 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 NECAB2Q7Z6G3 386 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 COL23A1Q86Y22 540 aaPredicted RBP6.16□□□□□ -1.42
VPS50-214ENST00000477935 TSPEARQ8WU66 669 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 AUTS2Q8WXX7 1259 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 SLC5A4Q9NY91 659 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 CCDC7Q96M83 1385 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 PLEKHG2Q9H7P9 1386 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 COL24A1Q17RW2 1714 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 KNDC1Q76NI1 1749 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 ARHGEF28Q8N1W1 1705 aaKnown RBP6.16□□□□□ -1.42
VPS50-214ENST00000477935 C10orf71Q711Q0 1435 aa6.16□□□□□ -1.42
VPS50-214ENST00000477935 PAPPAQ13219 1627 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 PHRF1Q9P1Y6 1649 aaKnown RBP6.15□□□□□ -1.42
VPS50-214ENST00000477935 PRAMEF4O60810 478 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 STC2O76061 302 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 CASRP41180 1078 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 WNT3AP56704 352 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 AMPD3Q01432 767 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 FKBP15Q5T1M5 1219 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 LCE5AQ5TCM9 118 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 ABHD15Q6UXT9 468 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 ANKRD35Q8N283 1001 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 CNTD1Q8N815 330 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 ARL8AQ96BM9 186 aa6.15□□□□□ -1.42
VPS50-214ENST00000477935 MIEF2Q96C03 454 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms