RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 ALS2CLQ60I27 953 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 WDR93Q6P2C0 686 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 RFX6Q8HWS3 928 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 PARP9Q8IXQ6 854 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 GPC2Q8N158 579 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 LRRC8CQ8TDW0 803 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 WHAMMQ8TF30 809 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 AENQ8WTP8 325 aaKnown RBP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 FAM149B1Q96BN6 582 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 CHMP6Q96FZ7 201 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 ZBTB45Q96K62 511 aaPredicted RBP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 IFT74Q96LB3 600 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 ZDHHC15Q96MV8 337 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 SPZ1Q9BXG8 430 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 SLCO1B3Q9NPD5 702 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 PARP2Q9UGN5 583 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 HAO1Q9UJM8 370 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 DNAH14Q0VDD8 3507 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 MUC3AQ02505 3323 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 PVALEFA0A1B0GWK0 134 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 ANKRD63C9JTQ0 380 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 FZD9O00144 591 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 CFLARO15519 480 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 GRIN3BO60391 1043 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 ZBED4O75132 1171 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 RRM1P23921 792 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 PHKA2P46019 1235 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 PDIA2Q13087 525 aaKnown RBP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 PSMD2Q13200 908 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 P3H1Q32P28 736 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 TAOK1Q7L7X3 1001 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 IL31RAQ8NI17 732 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 KIFAP3Q92845 792 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 STMN2Q93045 179 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 CUEDC2Q9H467 287 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 HOMER3Q9NSC5 361 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 TYW1Q9NV66 732 aaKnown RBP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 TELO2Q9Y4R8 837 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 RIPK3Q9Y572 518 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 POLR2AP24928 1970 aaKnown RBP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 HMGB1P1B2RPK0 211 aaPredicted RBP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 AGRPO00253 132 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 TLR3O15455 904 aaKnown RBP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 TOM1L1O75674 476 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 GJB1P08034 283 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 ITGA8P53708 1063 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 FSTL1Q12841 308 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 MTMR3Q13615 1198 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 NEDD9Q14511 834 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 MUM1L1Q5H9M0 696 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 GALNT17Q6IS24 598 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 CYB5D1Q6P9G0 228 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 ZBTB46Q86UZ6 589 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 TRIM50Q86XT4 487 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 MCUQ8NE86 351 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 NSMCE1Q8WV22 266 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 HNRNPLLQ8WVV9 542 aaKnown RBP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 FAM136AQ96C01 138 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 XPO6Q96QU8 1125 aaKnown RBP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 AGPAT1Q99943 283 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 UNC45AQ9H3U1 944 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 CXorf56Q9H5V9 222 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 RPAP3Q9H6T3 665 aaPredicted RBP5.31□□□□□ -1.56
CCDC39-204ENST00000476379 UBN1Q9NPG3 1134 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 FAM114A2Q9NRY5 505 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 GPATCH2LQ9NWQ4 482 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 HSPBP1Q9NZL4 362 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 NR2E3Q9Y5X4 410 aa5.31□□□□□ -1.56
CCDC39-204ENST00000476379 USP54Q70EL1 1684 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 UBR2Q8IWV8 1755 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 ADAMTSL1Q8N6G6 1762 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 ASCC3Q8N3C0 2202 aaKnown RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 LOC100653049A0A140TA62 436 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 A0A1B0GUA9 196 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 KRT34O76011 436 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 NOL4O94818 638 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 CBX6O95503 412 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 RPL21P46778 160 aaKnown RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 RAP1GAPP47736 663 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 PPP3CAQ08209 521 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 SPDYE2Q495Y8 402 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 ARSHQ5FYA8 562 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 CFAP157Q5JU67 520 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 IZUMO3Q5VZ72 239 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 NXNQ6DKJ4 435 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 PPM1NQ8N819 430 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 XXYLT1Q8NBI6 393 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 SPATA20Q8TB22 786 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 RFFLQ8WZ73 363 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 DNAJC19Q96DA6 116 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 NACC1Q96RE7 527 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 TAAR1Q96RJ0 339 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 NAP1L3Q99457 506 aaPredicted RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 TMEM121Q9BTD3 319 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 FAM49AQ9H0Q0 323 aaPredicted RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 EHMT1Q9H9B1 1298 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 AGPAT3Q9NRZ7 376 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 RAB20Q9NX57 234 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 SWAP70Q9UH65 585 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms