RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SLC39A14Q15043 492 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 QPRTQ15274 297 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 TCHHL1Q5QJ38 904 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 RNF220Q5VTB9 566 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 RFX6Q8HWS3 928 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 LSM14AQ8ND56 463 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF507Q8TCN5 953 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PCDH18Q9HCL0 1135 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 FBXO40Q9UH90 709 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PCDHA12Q9UN75 941 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 SIK3Q9Y2K2 1263 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 SEC24AO95486 1093 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 CLUP10909 449 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 POLR2BP30876 1174 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 NPTX2P47972 431 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 TRAPPC10P48553 1259 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 GSSP48637 474 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 NFYCQ13952 458 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 ARSHQ5FYA8 562 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 TAF2Q6P1X5 1199 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 OR8H1Q8NGG4 311 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 BPIFA3Q9BQP9 254 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 PAG1Q9NWQ8 432 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 MAN1B1Q9UKM7 699 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 EDARQ9UNE0 448 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 NPC1L1Q9UHC9 1359 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 LOC100653049A0A140TA62 436 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 FOXP2O15409 715 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 SYNCRIPO60506 623 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 KRT34O76011 436 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 SRP72O76094 671 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 PPP1R15BQ5SWA1 713 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 SCYL2Q6P3W7 929 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 CYFIP1Q7L576 1253 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 PRUNE1Q86TP1 453 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 ERICH1Q86X53 443 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 CCNYL1Q8N7R7 359 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 ADAMTS1Q9UHI8 967 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 DBR1Q9UK59 544 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 DPPA5A6NC42 116 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 TMEM247A6NEH6 219 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 PEX1O43933 1283 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 PPP6R2O75170 966 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 GABBR2O75899 941 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 SMNDC1O75940 238 aaKnown RBP eCLIP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 XRCC4Q13426 336 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF284Q2VY69 593 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 NOA1Q8NC60 698 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 PSMA8Q8TAA3 256 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 RORBQ92753 470 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 GPATCH1Q9BRR8 931 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 VPS11Q9H270 941 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 TLR7Q9NYK1 1049 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 HEY2Q9UBP5 337 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 DBF4Q9UBU7 674 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 HMGB3O15347 200 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 SIN3BO75182 1162 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 FGFR4P22455 802 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 EIF2S3P41091 472 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 PTDSS1P48651 473 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 NCAPHQ15003 741 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 TWF2Q6IBS0 349 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 PIK3C3Q8NEB9 887 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 APOL6Q9BWW8 343 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 MRPL44Q9H9J2 332 aaKnown RBP9.43□□□□□ -0.9
COL6A3-210ENST00000473258 SYNPO2Q9UMS6 1093 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 STK24Q9Y6E0 443 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 ITIH6Q6UXX5 1313 aa9.43□□□□□ -0.9
COL6A3-210ENST00000473258 H7C2Y5 167 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 CD2BP2O95400 341 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 COPZ1P61923 177 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PON2Q15165 354 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SWI5Q1ZZU3 235 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 LIN52Q52LA3 116 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ANGPTL8Q6UXH0 198 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PACS1Q6VY07 963 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 TOM1L2Q6ZVM7 507 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 BBS7Q8IWZ6 715 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SPICE1Q8N0Z3 855 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SRBD1Q8N5C6 995 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 MRPL50Q8N5N7 158 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PPM1NQ8N819 430 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 DNAAF3Q8N9W5 541 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 OTUD7AQ8TE49 926 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 CLIC6Q96NY7 704 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PNKPQ96T60 521 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SLC13A1Q9BZW2 595 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 EPB41L1Q9H4G0 881 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ACAD9Q9H845 621 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PPCSQ9HAB8 311 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF556Q9HAH1 456 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 MLXIPQ9HAP2 919 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 POLR3EQ9NVU0 708 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ASAP1Q9ULH1 1129 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 TTC7AQ9ULT0 858 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 V9GYQ6 96 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SNAP23O00161 211 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PIK3R2O00459 728 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PSIP1O75475 530 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms