RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ZMYND10O75800 440 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 MCF2P10911 925 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 PLCG1P19174 1290 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 AVPR2P30518 371 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 GBP2P32456 591 aaPredicted RBP18.26■□□□□ 0.51
USP40-212ENST00000473191 SLC10A6Q3KNW5 377 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 ZBTB41Q5SVQ8 909 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 DCLRE1AQ6PJP8 1040 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 UBALD2Q8IYN6 164 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 ACSF2Q96CM8 615 aaPredicted RBP18.26■□□□□ 0.51
USP40-212ENST00000473191 DDX27Q96GQ7 796 aaKnown RBP18.26■□□□□ 0.51
USP40-212ENST00000473191 EPSTI1Q96J88 318 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 ACAP3Q96P50 834 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 TIPINQ9BVW5 301 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 PRKD2Q9BZL6 878 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 PLEKHA4Q9H4M7 779 aa18.26■□□□□ 0.51
USP40-212ENST00000473191 PDCD11Q14690 1871 aaKnown RBP18.25■□□□□ 0.51
USP40-212ENST00000473191 PODXLO00592 558 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 OR1D2P34982 312 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 TNFSF9P41273 254 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 YARSP54577 528 aaKnown RBP18.25■□□□□ 0.51
USP40-212ENST00000473191 NCKAP1LP55160 1127 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 PTPAQ15257 358 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.25■□□□□ 0.51
USP40-212ENST00000473191 GET4Q7L5D6 327 aaPredicted RBP18.25■□□□□ 0.51
USP40-212ENST00000473191 GRASPQ7Z6J2 395 aaPredicted RBP18.25■□□□□ 0.51
USP40-212ENST00000473191 GPBP1Q86WP2 473 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 TMEM105Q8N8V8 129 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 HDAC7Q8WUI4 952 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 AK8Q96MA6 479 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 PIDD1Q9HB75 910 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 ZDHHC7Q9NXF8 308 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 CNTN3Q9P232 1028 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 MTRRQ9UBK8 725 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 TUBGCP4Q9UGJ1 667 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 CDY1Q9Y6F8 540 aa18.25■□□□□ 0.51
USP40-212ENST00000473191 DOCK8Q8NF50 2099 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 CITO14578 2027 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 CCL16O15467 120 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 TOM1L1O75674 476 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 C8AP07357 584 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 CXCL8P10145 99 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 KCNE1P15382 129 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 MARCKSP29966 332 aaPredicted RBP18.24■□□□□ 0.51
USP40-212ENST00000473191 UBA7P41226 1012 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 STRN3Q13033 797 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 RESTQ13127 1097 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 NOLC1Q14978 699 aaKnown RBP eCLIP18.24■□□□□ 0.51
USP40-212ENST00000473191 HAUS6Q7Z4H7 955 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 BRAPQ7Z569 592 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 RAD54LQ92698 747 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 FIZ1Q96SL8 496 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 BACH2Q9BYV9 841 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 RHOBTB2Q9BYZ6 727 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 IKZF4Q9H2S9 585 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 TOPORSQ9NS56 1045 aaPredicted RBP18.24■□□□□ 0.51
USP40-212ENST00000473191 HCFC1R1Q9NWW0 138 aa18.24■□□□□ 0.51
USP40-212ENST00000473191 MUC6Q6W4X9 2439 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 SYT1P21579 422 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 CREMQ03060 361 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 CEBPZQ03701 1054 aaKnown RBP18.23■□□□□ 0.51
USP40-212ENST00000473191 MCL1Q07820 350 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 ELAVL2Q12926 359 aaKnown RBP18.23■□□□□ 0.51
USP40-212ENST00000473191 TDGQ13569 410 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 RAB33AQ14088 237 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 CWF19L1Q69YN2 538 aaKnown RBP18.23■□□□□ 0.51
USP40-212ENST00000473191 SLC39A4Q6P5W5 647 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 SLC7A14Q8TBB6 771 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 CALML4Q96GE6 196 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 UROC1Q96N76 676 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 CLIC6Q96NY7 704 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 RPP25Q9BUL9 199 aaKnown RBP18.23■□□□□ 0.51
USP40-212ENST00000473191 KCNH6Q9H252 994 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 FAM86C1Q9NVL1 165 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 KCND2Q9NZV8 630 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 DPP7Q9UHL4 492 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 DUSP12Q9UNI6 340 aa18.23■□□□□ 0.51
USP40-212ENST00000473191 NOTCH4Q99466 2003 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 TISP43B9A030 160 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 FAM189A1O60320 539 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 C1RP00736 705 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 NPR3P17342 541 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 NMT1P30419 496 aaKnown RBP18.22■□□□□ 0.51
USP40-212ENST00000473191 LONP1P36776 959 aaKnown RBP18.22■□□□□ 0.51
USP40-212ENST00000473191 GUCY2FP51841 1108 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 ZNF131P52739 623 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 SMTNP53814 917 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 PPM1LQ5SGD2 360 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 AXDND1Q5T1B0 1012 aaPredicted RBP18.22■□□□□ 0.51
USP40-212ENST00000473191 POTEHQ6S545 545 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 ZPBP2Q6X784 338 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 APBB1IPQ7Z5R6 666 aaPredicted RBP18.22■□□□□ 0.51
USP40-212ENST00000473191 KCTD17Q8N5Z5 321 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 MYCT1Q8N699 235 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 EPS15L1Q9UBC2 864 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 FBXO2Q9UK22 296 aaPredicted RBP18.22■□□□□ 0.51
USP40-212ENST00000473191 POLIQ9UNA4 740 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 COL4A3Q01955 1670 aa18.22■□□□□ 0.51
USP40-212ENST00000473191 K7ENM7 598 aa18.21■□□□□ 0.51
USP40-212ENST00000473191 CLDN3O15551 220 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms